Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34400

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34390 and PGA1_c34400 are separated by 354 nucleotidesPGA1_c34400 and PGA1_c34410 are separated by 65 nucleotidesPGA1_c34410 and PGA1_c34420 are separated by 105 nucleotides PGA1_c34390: PGA1_c34390 - spermidine/putrescine import ATP-binding protein PotA, at 3,605,666 to 3,606,766 _c34390 PGA1_c34400: PGA1_c34400 - aminotransferase class-III, at 3,607,121 to 3,608,515 _c34400 PGA1_c34410: PGA1_c34410 - HTH-type transcriptional regulator, GntR family, at 3,608,581 to 3,609,303 _c34410 PGA1_c34420: PGA1_c34420 - putrescine-binding periplasmic protein PotF, at 3,609,409 to 3,610,494 _c34420 Position (kb) 3607 3608 3609Strain fitness (log2 ratio) -1 0 1 2at 3606.149 kb on - strand, within PGA1_c34390at 3606.159 kb on + strand, within PGA1_c34390at 3606.202 kb on - strand, within PGA1_c34390at 3606.351 kb on + strand, within PGA1_c34390at 3606.352 kb on + strand, within PGA1_c34390at 3606.404 kb on - strand, within PGA1_c34390at 3606.420 kb on + strand, within PGA1_c34390at 3606.428 kb on - strand, within PGA1_c34390at 3606.450 kb on + strand, within PGA1_c34390at 3606.460 kb on - strand, within PGA1_c34390at 3606.485 kb on - strand, within PGA1_c34390at 3606.516 kb on - strand, within PGA1_c34390at 3606.532 kb on + strand, within PGA1_c34390at 3606.570 kb on - strand, within PGA1_c34390at 3606.582 kb on + strand, within PGA1_c34390at 3606.615 kb on + strand, within PGA1_c34390at 3606.615 kb on + strand, within PGA1_c34390at 3606.682 kb on - strandat 3606.682 kb on - strandat 3606.702 kb on - strandat 3606.749 kb on + strandat 3606.755 kb on - strandat 3606.775 kb on + strandat 3606.826 kb on + strandat 3606.826 kb on + strandat 3606.826 kb on + strandat 3606.828 kb on + strandat 3606.835 kb on - strandat 3606.836 kb on - strandat 3606.862 kb on - strandat 3606.903 kb on - strandat 3606.987 kb on - strandat 3607.002 kb on - strandat 3607.014 kb on + strandat 3607.073 kb on + strandat 3607.112 kb on + strandat 3607.120 kb on + strandat 3607.147 kb on - strandat 3607.371 kb on - strand, within PGA1_c34400at 3607.389 kb on + strand, within PGA1_c34400at 3607.537 kb on + strand, within PGA1_c34400at 3607.556 kb on - strand, within PGA1_c34400at 3607.582 kb on - strand, within PGA1_c34400at 3607.649 kb on - strand, within PGA1_c34400at 3607.708 kb on + strand, within PGA1_c34400at 3607.716 kb on - strand, within PGA1_c34400at 3607.779 kb on + strand, within PGA1_c34400at 3607.820 kb on + strand, within PGA1_c34400at 3607.853 kb on + strand, within PGA1_c34400at 3607.864 kb on + strand, within PGA1_c34400at 3608.020 kb on + strand, within PGA1_c34400at 3608.116 kb on + strand, within PGA1_c34400at 3608.171 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.224 kb on + strand, within PGA1_c34400at 3608.232 kb on - strand, within PGA1_c34400at 3608.278 kb on - strand, within PGA1_c34400at 3608.333 kb on - strand, within PGA1_c34400at 3608.385 kb on - strandat 3608.385 kb on - strandat 3608.385 kb on - strandat 3608.468 kb on - strandat 3608.615 kb on + strandat 3608.615 kb on + strandat 3608.615 kb on + strandat 3608.661 kb on - strand, within PGA1_c34410at 3608.667 kb on - strand, within PGA1_c34410at 3608.679 kb on - strand, within PGA1_c34410at 3608.682 kb on - strand, within PGA1_c34410at 3608.682 kb on - strand, within PGA1_c34410at 3608.713 kb on + strand, within PGA1_c34410at 3608.713 kb on + strand, within PGA1_c34410at 3608.716 kb on - strand, within PGA1_c34410at 3608.720 kb on + strand, within PGA1_c34410at 3608.748 kb on + strand, within PGA1_c34410at 3608.754 kb on + strand, within PGA1_c34410at 3608.754 kb on + strand, within PGA1_c34410at 3608.789 kb on + strand, within PGA1_c34410at 3608.813 kb on + strand, within PGA1_c34410at 3608.813 kb on + strand, within PGA1_c34410at 3608.852 kb on - strand, within PGA1_c34410at 3608.902 kb on - strand, within PGA1_c34410at 3608.927 kb on + strand, within PGA1_c34410at 3609.005 kb on + strand, within PGA1_c34410at 3609.013 kb on - strand, within PGA1_c34410at 3609.024 kb on - strand, within PGA1_c34410at 3609.024 kb on - strand, within PGA1_c34410at 3609.026 kb on + strand, within PGA1_c34410at 3609.137 kb on + strand, within PGA1_c34410at 3609.237 kb on + strandat 3609.309 kb on - strandat 3609.316 kb on + strandat 3609.345 kb on + strandat 3609.398 kb on + strandat 3609.413 kb on - strandat 3609.413 kb on - strandat 3609.453 kb on - strandat 3609.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,606,149 - PGA1_c34390 0.44 +0.4
3,606,159 + PGA1_c34390 0.45 -0.8
3,606,202 - PGA1_c34390 0.49 -0.1
3,606,351 + PGA1_c34390 0.62 -0.1
3,606,352 + PGA1_c34390 0.62 +0.2
3,606,404 - PGA1_c34390 0.67 -0.6
3,606,420 + PGA1_c34390 0.68 -0.5
3,606,428 - PGA1_c34390 0.69 -0.4
3,606,450 + PGA1_c34390 0.71 -0.8
3,606,460 - PGA1_c34390 0.72 +0.3
3,606,485 - PGA1_c34390 0.74 +0.5
3,606,516 - PGA1_c34390 0.77 -0.4
3,606,532 + PGA1_c34390 0.79 -0.8
3,606,570 - PGA1_c34390 0.82 -0.7
3,606,582 + PGA1_c34390 0.83 -0.9
3,606,615 + PGA1_c34390 0.86 -0.1
3,606,615 + PGA1_c34390 0.86 -0.3
3,606,682 - +0.7
3,606,682 - +0.8
3,606,702 - +0.1
3,606,749 + -0.2
3,606,755 - -1.3
3,606,775 + -0.3
3,606,826 + -1.2
3,606,826 + +0.4
3,606,826 + +0.4
3,606,828 + -0.2
3,606,835 - -0.2
3,606,836 - +0.1
3,606,862 - -1.1
3,606,903 - +0.6
3,606,987 - +0.8
3,607,002 - +0.8
3,607,014 + -0.7
3,607,073 + +0.5
3,607,112 + +0.8
3,607,120 + +0.7
3,607,147 - -0.4
3,607,371 - PGA1_c34400 0.18 -0.4
3,607,389 + PGA1_c34400 0.19 -1.3
3,607,537 + PGA1_c34400 0.30 +0.4
3,607,556 - PGA1_c34400 0.31 +0.3
3,607,582 - PGA1_c34400 0.33 -0.4
3,607,649 - PGA1_c34400 0.38 +0.4
3,607,708 + PGA1_c34400 0.42 +0.0
3,607,716 - PGA1_c34400 0.43 +0.9
3,607,779 + PGA1_c34400 0.47 +2.4
3,607,820 + PGA1_c34400 0.50 +0.2
3,607,853 + PGA1_c34400 0.52 -0.1
3,607,864 + PGA1_c34400 0.53 +0.1
3,608,020 + PGA1_c34400 0.64 +0.4
3,608,116 + PGA1_c34400 0.71 -0.2
3,608,171 + PGA1_c34400 0.75 -0.1
3,608,224 + PGA1_c34400 0.79 -0.6
3,608,224 + PGA1_c34400 0.79 +0.5
3,608,224 + PGA1_c34400 0.79 +0.8
3,608,224 + PGA1_c34400 0.79 +1.0
3,608,224 + PGA1_c34400 0.79 +0.6
3,608,224 + PGA1_c34400 0.79 +0.9
3,608,224 + PGA1_c34400 0.79 +0.7
3,608,232 - PGA1_c34400 0.80 +0.8
3,608,278 - PGA1_c34400 0.83 +0.4
3,608,333 - PGA1_c34400 0.87 +1.2
3,608,385 - +1.4
3,608,385 - +1.0
3,608,385 - -0.5
3,608,468 - -0.5
3,608,615 + -0.5
3,608,615 + -0.6
3,608,615 + +0.6
3,608,661 - PGA1_c34410 0.11 -0.3
3,608,667 - PGA1_c34410 0.12 +0.5
3,608,679 - PGA1_c34410 0.14 +0.3
3,608,682 - PGA1_c34410 0.14 -0.4
3,608,682 - PGA1_c34410 0.14 -0.3
3,608,713 + PGA1_c34410 0.18 -0.1
3,608,713 + PGA1_c34410 0.18 +0.4
3,608,716 - PGA1_c34410 0.19 -1.2
3,608,720 + PGA1_c34410 0.19 +1.0
3,608,748 + PGA1_c34410 0.23 +0.8
3,608,754 + PGA1_c34410 0.24 +0.2
3,608,754 + PGA1_c34410 0.24 +0.3
3,608,789 + PGA1_c34410 0.29 -0.3
3,608,813 + PGA1_c34410 0.32 -0.8
3,608,813 + PGA1_c34410 0.32 -0.5
3,608,852 - PGA1_c34410 0.37 -0.7
3,608,902 - PGA1_c34410 0.44 -0.5
3,608,927 + PGA1_c34410 0.48 +0.1
3,609,005 + PGA1_c34410 0.59 +0.4
3,609,013 - PGA1_c34410 0.60 +0.7
3,609,024 - PGA1_c34410 0.61 -0.8
3,609,024 - PGA1_c34410 0.61 +0.8
3,609,026 + PGA1_c34410 0.62 -0.2
3,609,137 + PGA1_c34410 0.77 +0.3
3,609,237 + +0.0
3,609,309 - +1.3
3,609,316 + +0.1
3,609,345 + -1.0
3,609,398 + -0.6
3,609,413 - -0.1
3,609,413 - +0.1
3,609,453 - -1.4
3,609,508 + -0.4

Or see this region's nucleotide sequence