Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_329 and HP15_330 overlap by 11 nucleotides HP15_330 and HP15_331 are separated by 50 nucleotides HP15_331 and HP15_332 are separated by 61 nucleotides HP15_332 and HP15_333 are separated by 179 nucleotides
HP15_329: HP15_329 - two-component sensor, at 325,645 to 328,608
_329
HP15_330: HP15_330 - conserved hypothetical protein, membrane, at 328,598 to 328,774
_330
HP15_331: HP15_331 - glutamyl-Q tRNA(Asp) synthetase, at 328,825 to 329,697
_331
HP15_332: HP15_332 - transcriptional regulator, TraR/DksA family, at 329,759 to 330,199
_332
HP15_333: HP15_333 - sugar fermentation stimulation protein-like protein, at 330,379 to 331,110
_333
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 328.094 kb on - strand, within HP15_329 at 328.341 kb on - strand at 328.525 kb on - strand at 328.668 kb on - strand, within HP15_330 at 328.679 kb on - strand, within HP15_330 at 328.808 kb on + strand at 328.808 kb on + strand at 328.808 kb on + strand at 328.816 kb on - strand at 328.816 kb on - strand at 329.001 kb on - strand, within HP15_331 at 329.099 kb on + strand, within HP15_331 at 329.112 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.120 kb on - strand, within HP15_331 at 329.131 kb on - strand, within HP15_331 at 329.180 kb on + strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.188 kb on - strand, within HP15_331 at 329.193 kb on - strand, within HP15_331 at 329.223 kb on - strand, within HP15_331 at 329.225 kb on + strand, within HP15_331 at 329.242 kb on - strand, within HP15_331 at 329.246 kb on + strand, within HP15_331 at 329.254 kb on - strand, within HP15_331 at 329.354 kb on - strand, within HP15_331 at 329.414 kb on + strand, within HP15_331 at 329.449 kb on + strand, within HP15_331 at 329.552 kb on - strand, within HP15_331 at 329.562 kb on + strand, within HP15_331 at 329.664 kb on + strand at 330.117 kb on + strand, within HP15_332 at 330.280 kb on - strand at 330.339 kb on + strand at 330.423 kb on + strand at 330.541 kb on - strand, within HP15_333 at 330.575 kb on - strand, within HP15_333 at 330.583 kb on - strand, within HP15_333 at 330.594 kb on - strand, within HP15_333 at 330.604 kb on + strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.663 kb on - strand, within HP15_333 at 330.697 kb on - strand, within HP15_333
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 328,094 - HP15_329 0.83 +0.6 328,341 - +0.6 328,525 - -0.6 328,668 - HP15_330 0.40 +0.5 328,679 - HP15_330 0.46 +0.5 328,808 + -1.0 328,808 + -1.0 328,808 + -1.6 328,816 - -0.1 328,816 - +0.2 329,001 - HP15_331 0.20 -0.1 329,099 + HP15_331 0.31 -1.8 329,112 - HP15_331 0.33 -0.4 329,120 - HP15_331 0.34 -1.2 329,120 - HP15_331 0.34 -0.7 329,131 - HP15_331 0.35 -1.6 329,180 + HP15_331 0.41 -1.3 329,188 - HP15_331 0.42 -0.1 329,188 - HP15_331 0.42 +0.1 329,193 - HP15_331 0.42 -0.4 329,223 - HP15_331 0.46 +0.1 329,225 + HP15_331 0.46 -1.1 329,242 - HP15_331 0.48 -0.3 329,246 + HP15_331 0.48 -0.9 329,254 - HP15_331 0.49 -1.2 329,354 - HP15_331 0.61 -0.6 329,414 + HP15_331 0.67 -0.9 329,449 + HP15_331 0.71 +0.9 329,552 - HP15_331 0.83 -0.6 329,562 + HP15_331 0.84 -0.2 329,664 + +1.1 330,117 + HP15_332 0.81 -0.3 330,280 - -1.1 330,339 + +0.2 330,423 + -0.3 330,541 - HP15_333 0.22 -2.0 330,575 - HP15_333 0.27 +1.6 330,583 - HP15_333 0.28 -0.3 330,594 - HP15_333 0.29 +0.7 330,604 + HP15_333 0.31 -0.8 330,612 - HP15_333 0.32 +0.3 330,612 - HP15_333 0.32 -1.0 330,663 - HP15_333 0.39 +0.0 330,697 - HP15_333 0.43 -0.1
Or see this region's nucleotide sequence