Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_300 and HP15_301 are separated by 168 nucleotides HP15_301 and HP15_302 are separated by 21 nucleotides HP15_302 and HP15_303 are separated by 148 nucleotides
HP15_300: HP15_300 - ribonuclease PH, at 291,114 to 291,830
_300
HP15_301: HP15_301 - conserved hypothetical protein, at 291,999 to 292,865
_301
HP15_302: HP15_302 - protein containing pseudouridine synthase domain, at 292,887 to 293,708
_302
HP15_303: HP15_303 - guanylate kinase, at 293,857 to 294,489
_303
Position (kb) 291
292
293 Strain fitness (log2 ratio) -1
0
1
2
3 at 291.018 kb on - strand at 291.033 kb on - strand at 291.128 kb on - strand at 291.152 kb on + strand at 291.160 kb on - strand at 291.194 kb on - strand, within HP15_300 at 291.225 kb on + strand, within HP15_300 at 291.293 kb on + strand, within HP15_300 at 291.303 kb on + strand, within HP15_300 at 291.311 kb on - strand, within HP15_300 at 291.311 kb on - strand, within HP15_300 at 291.654 kb on + strand, within HP15_300 at 291.655 kb on + strand, within HP15_300 at 291.668 kb on - strand, within HP15_300 at 291.746 kb on + strand, within HP15_300 at 291.746 kb on + strand, within HP15_300 at 291.793 kb on + strand at 291.801 kb on - strand at 291.811 kb on - strand at 291.868 kb on + strand at 291.918 kb on - strand at 291.955 kb on - strand at 291.955 kb on - strand at 291.955 kb on - strand at 291.991 kb on + strand at 291.999 kb on - strand at 292.034 kb on + strand at 292.042 kb on - strand at 292.053 kb on + strand at 292.056 kb on - strand at 292.061 kb on - strand at 292.061 kb on - strand at 292.075 kb on - strand at 292.182 kb on + strand, within HP15_301 at 292.213 kb on + strand, within HP15_301 at 292.310 kb on + strand, within HP15_301 at 292.325 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.373 kb on - strand, within HP15_301 at 292.375 kb on + strand, within HP15_301 at 292.511 kb on + strand, within HP15_301 at 292.532 kb on - strand, within HP15_301 at 292.605 kb on + strand, within HP15_301 at 292.613 kb on - strand, within HP15_301 at 292.613 kb on - strand, within HP15_301 at 292.807 kb on - strand at 292.903 kb on - strand at 292.939 kb on + strand at 292.944 kb on + strand at 292.944 kb on + strand at 292.944 kb on + strand at 292.952 kb on - strand at 292.983 kb on + strand, within HP15_302 at 293.116 kb on + strand, within HP15_302 at 293.134 kb on - strand, within HP15_302 at 293.233 kb on + strand, within HP15_302 at 293.266 kb on - strand, within HP15_302 at 293.317 kb on + strand, within HP15_302 at 293.425 kb on + strand, within HP15_302 at 293.440 kb on + strand, within HP15_302 at 293.440 kb on + strand, within HP15_302 at 293.448 kb on - strand, within HP15_302 at 293.448 kb on - strand, within HP15_302 at 293.553 kb on + strand, within HP15_302 at 293.664 kb on + strand at 293.678 kb on + strand at 293.734 kb on - strand at 293.745 kb on - strand at 293.759 kb on + strand at 293.759 kb on + strand at 293.759 kb on + strand at 293.760 kb on - strand at 293.767 kb on - strand at 293.769 kb on - strand at 293.769 kb on - strand at 293.838 kb on + strand at 293.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 291,018 - -0.1 291,033 - -0.5 291,128 - +1.4 291,152 + +1.8 291,160 - +2.2 291,194 - HP15_300 0.11 +1.2 291,225 + HP15_300 0.15 +1.4 291,293 + HP15_300 0.25 +3.1 291,303 + HP15_300 0.26 +1.4 291,311 - HP15_300 0.27 +1.3 291,311 - HP15_300 0.27 +1.8 291,654 + HP15_300 0.75 +1.8 291,655 + HP15_300 0.75 +1.8 291,668 - HP15_300 0.77 +2.2 291,746 + HP15_300 0.88 +1.7 291,746 + HP15_300 0.88 +2.0 291,793 + +1.4 291,801 - +2.1 291,811 - +2.1 291,868 + +0.3 291,918 - -1.0 291,955 - -0.3 291,955 - -0.2 291,955 - +0.1 291,991 + -0.0 291,999 - -0.2 292,034 + -0.1 292,042 - -0.2 292,053 + -0.5 292,056 - -0.1 292,061 - +0.6 292,061 - +0.4 292,075 - -0.0 292,182 + HP15_301 0.21 +0.0 292,213 + HP15_301 0.25 -0.9 292,310 + HP15_301 0.36 -0.1 292,325 - HP15_301 0.38 -0.2 292,373 - HP15_301 0.43 +0.1 292,373 - HP15_301 0.43 -0.6 292,373 - HP15_301 0.43 +0.4 292,375 + HP15_301 0.43 +0.2 292,511 + HP15_301 0.59 -0.6 292,532 - HP15_301 0.61 -0.3 292,605 + HP15_301 0.70 -0.8 292,613 - HP15_301 0.71 +0.2 292,613 - HP15_301 0.71 +0.0 292,807 - +0.5 292,903 - +0.0 292,939 + -0.0 292,944 + +0.1 292,944 + +0.5 292,944 + -0.2 292,952 - -0.5 292,983 + HP15_302 0.12 +0.1 293,116 + HP15_302 0.28 +0.2 293,134 - HP15_302 0.30 -0.2 293,233 + HP15_302 0.42 -0.4 293,266 - HP15_302 0.46 +0.5 293,317 + HP15_302 0.52 +0.0 293,425 + HP15_302 0.65 -0.3 293,440 + HP15_302 0.67 -0.5 293,440 + HP15_302 0.67 -0.5 293,448 - HP15_302 0.68 -0.1 293,448 - HP15_302 0.68 +0.7 293,553 + HP15_302 0.81 +0.5 293,664 + +1.1 293,678 + +0.6 293,734 - +0.5 293,745 - -0.8 293,759 + +0.1 293,759 + +0.2 293,759 + +0.5 293,760 - -0.3 293,767 - -1.3 293,769 - +0.1 293,769 - +0.6 293,838 + +1.9 293,838 + -0.0
Or see this region's nucleotide sequence