Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c30550 and PGA1_c30560 are separated by 9 nucleotides PGA1_c30560 and PGA1_c30570 are separated by 77 nucleotides PGA1_c30570 and PGA1_c30580 are separated by 100 nucleotides PGA1_c30580 and PGA1_c30590 are separated by 175 nucleotides
PGA1_c30550: PGA1_c30550 - Domain of Unknown Function (DUF1206)., at 3,189,685 to 3,190,587
_c30550
PGA1_c30560: PGA1_c30560 - HTH-type transcriptional regulator, GntR family, at 3,190,597 to 3,191,265
_c30560
PGA1_c30570: PGA1_c30570 - Predicted metal-dependent hydrolase, at 3,191,343 to 3,192,035
_c30570
PGA1_c30580: PGA1_c30580 - TIGR02300 family protein, at 3,192,136 to 3,192,462
_c30580
PGA1_c30590: PGA1_c30590 - tRNA-Ala, at 3,192,638 to 3,192,713
_c30590
Position (kb)
3191
3192
3193 Strain fitness (log2 ratio)
-1
0
1 at 3190.381 kb on - strand, within PGA1_c30550 at 3190.425 kb on - strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on + strand, within PGA1_c30550 at 3190.480 kb on - strand, within PGA1_c30550 at 3190.487 kb on + strand, within PGA1_c30550 at 3190.488 kb on - strand, within PGA1_c30550 at 3190.495 kb on + strand, within PGA1_c30550 at 3190.495 kb on - strand, within PGA1_c30550 at 3190.500 kb on - strand at 3190.505 kb on + strand at 3190.523 kb on - strand at 3190.528 kb on + strand at 3190.548 kb on - strand at 3191.200 kb on + strand at 3191.295 kb on + strand at 3191.318 kb on + strand at 3191.501 kb on + strand, within PGA1_c30570 at 3191.501 kb on + strand, within PGA1_c30570 at 3191.509 kb on - strand, within PGA1_c30570 at 3191.630 kb on + strand, within PGA1_c30570 at 3191.808 kb on + strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.816 kb on - strand, within PGA1_c30570 at 3191.821 kb on + strand, within PGA1_c30570 at 3191.980 kb on + strand at 3191.980 kb on + strand at 3191.988 kb on - strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.058 kb on + strand at 3192.060 kb on - strand at 3192.337 kb on + strand, within PGA1_c30580 at 3192.345 kb on - strand, within PGA1_c30580 at 3192.464 kb on - strand at 3192.497 kb on + strand at 3192.588 kb on + strand at 3192.869 kb on - strand at 3192.889 kb on + strand at 3192.923 kb on + strand at 3192.928 kb on + strand at 3192.938 kb on + strand at 3192.946 kb on - strand at 3192.946 kb on - strand at 3193.006 kb on + strand at 3193.013 kb on - strand at 3193.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,190,381 - PGA1_c30550 0.77 -0.3 3,190,425 - PGA1_c30550 0.82 +0.6 3,190,480 + PGA1_c30550 0.88 +0.1 3,190,480 + PGA1_c30550 0.88 -1.3 3,190,480 + PGA1_c30550 0.88 -0.0 3,190,480 - PGA1_c30550 0.88 +0.2 3,190,487 + PGA1_c30550 0.89 +0.8 3,190,488 - PGA1_c30550 0.89 -0.4 3,190,495 + PGA1_c30550 0.90 +1.3 3,190,495 - PGA1_c30550 0.90 -0.3 3,190,500 - +0.2 3,190,505 + -0.6 3,190,523 - -0.1 3,190,528 + -0.9 3,190,548 - +1.0 3,191,200 + -1.6 3,191,295 + -0.4 3,191,318 + +0.1 3,191,501 + PGA1_c30570 0.23 +0.8 3,191,501 + PGA1_c30570 0.23 +0.9 3,191,509 - PGA1_c30570 0.24 +0.7 3,191,630 + PGA1_c30570 0.41 +0.4 3,191,808 + PGA1_c30570 0.67 +0.9 3,191,816 - PGA1_c30570 0.68 -0.4 3,191,816 - PGA1_c30570 0.68 -1.7 3,191,816 - PGA1_c30570 0.68 +0.3 3,191,816 - PGA1_c30570 0.68 +0.3 3,191,821 + PGA1_c30570 0.69 +1.0 3,191,980 + -0.1 3,191,980 + -1.0 3,191,988 - -0.3 3,192,058 + +0.1 3,192,058 + -0.9 3,192,058 + -1.0 3,192,060 - +0.1 3,192,337 + PGA1_c30580 0.61 -0.6 3,192,345 - PGA1_c30580 0.64 -1.1 3,192,464 - +0.7 3,192,497 + -0.2 3,192,588 + +0.6 3,192,869 - +0.3 3,192,889 + -0.1 3,192,923 + -0.6 3,192,928 + -0.2 3,192,938 + -0.5 3,192,946 - +0.5 3,192,946 - -1.0 3,193,006 + -0.7 3,193,013 - +0.5 3,193,014 - +0.2
Or see this region's nucleotide sequence