Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2913 and HP15_2914 are separated by 235 nucleotides HP15_2914 and HP15_2915 are separated by 149 nucleotides
HP15_2913: HP15_2913 - bacterial transketolase, at 3,050,685 to 3,052,685
_2913
HP15_2914: HP15_2914 - protein containing Methyltransferase type 11 domain, at 3,052,921 to 3,053,922
_2914
HP15_2915: HP15_2915 - S-adenosylmethionine synthetase, at 3,054,072 to 3,055,262
_2915
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-1
0
1
2 at 3053.019 kb on - strand at 3053.112 kb on + strand, within HP15_2914 at 3053.112 kb on + strand, within HP15_2914 at 3053.112 kb on + strand, within HP15_2914 at 3053.291 kb on + strand, within HP15_2914 at 3053.296 kb on + strand, within HP15_2914 at 3053.301 kb on + strand, within HP15_2914 at 3053.392 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.529 kb on + strand, within HP15_2914 at 3053.552 kb on - strand, within HP15_2914 at 3053.588 kb on - strand, within HP15_2914 at 3053.607 kb on + strand, within HP15_2914 at 3053.610 kb on - strand, within HP15_2914 at 3053.661 kb on + strand, within HP15_2914 at 3053.703 kb on - strand, within HP15_2914 at 3053.733 kb on + strand, within HP15_2914 at 3053.736 kb on + strand, within HP15_2914 at 3053.744 kb on - strand, within HP15_2914 at 3053.751 kb on + strand, within HP15_2914 at 3053.765 kb on - strand, within HP15_2914 at 3053.789 kb on + strand, within HP15_2914 at 3053.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 3,053,019 - -0.1 3,053,112 + HP15_2914 0.19 +0.3 3,053,112 + HP15_2914 0.19 +0.4 3,053,112 + HP15_2914 0.19 +1.8 3,053,291 + HP15_2914 0.37 -0.3 3,053,296 + HP15_2914 0.37 +2.4 3,053,301 + HP15_2914 0.38 +0.6 3,053,392 + HP15_2914 0.47 +1.1 3,053,529 + HP15_2914 0.61 +1.2 3,053,529 + HP15_2914 0.61 +1.0 3,053,529 + HP15_2914 0.61 +0.8 3,053,552 - HP15_2914 0.63 -1.1 3,053,588 - HP15_2914 0.67 -0.5 3,053,607 + HP15_2914 0.68 +0.9 3,053,610 - HP15_2914 0.69 +0.0 3,053,661 + HP15_2914 0.74 +1.1 3,053,703 - HP15_2914 0.78 -0.3 3,053,733 + HP15_2914 0.81 +0.8 3,053,736 + HP15_2914 0.81 +0.4 3,053,744 - HP15_2914 0.82 -1.1 3,053,751 + HP15_2914 0.83 +1.1 3,053,765 - HP15_2914 0.84 +1.3 3,053,789 + HP15_2914 0.87 +0.1 3,053,853 - -0.5
Or see this region's nucleotide sequence