Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c29030 and PGA1_c29040 are separated by 177 nucleotides PGA1_c29040 and PGA1_c29050 overlap by 4 nucleotides PGA1_c29050 and PGA1_c29060 are separated by 101 nucleotides PGA1_c29060 and PGA1_c29070 are separated by 83 nucleotides
PGA1_c29030: PGA1_c29030 - HTH-type transcriptional regulator, AraC family, related to methylated-DNA-[protein]-cysteine S-methyltransferase, at 3,043,299 to 3,044,156
_c29030
PGA1_c29040: PGA1_c29040 - endonuclease III, at 3,044,334 to 3,044,978
_c29040
PGA1_c29050: PGA1_c29050 - putative carbohydrate kinase, PfkB family, at 3,044,975 to 3,045,964
_c29050
PGA1_c29060: PGA1_c29060 - HTH-type transcriptional regulator PecS, at 3,046,066 to 3,046,554
_c29060
PGA1_c29070: PGA1_c29070 - integral membrane protein PecM, at 3,046,638 to 3,047,507
_c29070
Position (kb)
3044
3045
3046 Strain fitness (log2 ratio)
-1
0
1
2 at 3044.001 kb on - strand, within PGA1_c29030 at 3044.067 kb on + strand, within PGA1_c29030 at 3044.067 kb on + strand, within PGA1_c29030 at 3044.067 kb on + strand, within PGA1_c29030 at 3044.104 kb on - strand at 3044.151 kb on - strand at 3044.152 kb on + strand at 3044.164 kb on - strand at 3044.165 kb on + strand at 3044.173 kb on - strand at 3044.173 kb on - strand at 3044.173 kb on - strand at 3044.173 kb on - strand at 3044.173 kb on - strand at 3044.198 kb on + strand at 3044.198 kb on + strand at 3044.202 kb on + strand at 3044.202 kb on + strand at 3044.202 kb on + strand at 3044.210 kb on - strand at 3044.210 kb on - strand at 3044.210 kb on - strand at 3044.235 kb on - strand at 3044.261 kb on + strand at 3044.264 kb on - strand at 3044.269 kb on - strand at 3044.269 kb on - strand at 3044.304 kb on + strand at 3044.312 kb on - strand at 3044.319 kb on + strand at 3044.319 kb on + strand at 3044.319 kb on + strand at 3044.319 kb on + strand at 3044.319 kb on + strand at 3044.319 kb on + strand at 3044.327 kb on - strand at 3044.327 kb on - strand at 3044.327 kb on - strand at 3044.327 kb on - strand at 3044.327 kb on - strand at 3044.327 kb on - strand at 3044.334 kb on - strand at 3044.361 kb on - strand at 3044.381 kb on + strand at 3044.381 kb on + strand at 3044.381 kb on + strand at 3044.389 kb on - strand at 3044.389 kb on - strand at 3044.410 kb on - strand, within PGA1_c29040 at 3044.410 kb on - strand, within PGA1_c29040 at 3044.431 kb on + strand, within PGA1_c29040 at 3044.431 kb on - strand, within PGA1_c29040 at 3044.437 kb on + strand, within PGA1_c29040 at 3044.497 kb on + strand, within PGA1_c29040 at 3044.526 kb on + strand, within PGA1_c29040 at 3044.546 kb on + strand, within PGA1_c29040 at 3044.570 kb on + strand, within PGA1_c29040 at 3044.570 kb on + strand, within PGA1_c29040 at 3044.578 kb on + strand, within PGA1_c29040 at 3044.583 kb on + strand, within PGA1_c29040 at 3044.583 kb on + strand, within PGA1_c29040 at 3044.583 kb on + strand, within PGA1_c29040 at 3044.586 kb on - strand, within PGA1_c29040 at 3044.591 kb on - strand, within PGA1_c29040 at 3044.761 kb on + strand, within PGA1_c29040 at 3044.761 kb on + strand, within PGA1_c29040 at 3044.769 kb on - strand, within PGA1_c29040 at 3044.854 kb on + strand, within PGA1_c29040 at 3044.893 kb on + strand, within PGA1_c29040 at 3044.901 kb on - strand, within PGA1_c29040 at 3045.042 kb on + strand at 3045.042 kb on + strand at 3045.042 kb on + strand at 3045.050 kb on - strand at 3045.246 kb on - strand, within PGA1_c29050 at 3045.246 kb on - strand, within PGA1_c29050 at 3045.250 kb on + strand, within PGA1_c29050 at 3045.258 kb on - strand, within PGA1_c29050 at 3045.378 kb on + strand, within PGA1_c29050 at 3045.554 kb on + strand, within PGA1_c29050 at 3045.636 kb on - strand, within PGA1_c29050 at 3045.648 kb on - strand, within PGA1_c29050 at 3045.665 kb on + strand, within PGA1_c29050 at 3045.670 kb on + strand, within PGA1_c29050 at 3045.670 kb on + strand, within PGA1_c29050 at 3045.678 kb on - strand, within PGA1_c29050 at 3045.680 kb on + strand, within PGA1_c29050 at 3045.688 kb on - strand, within PGA1_c29050 at 3045.729 kb on + strand, within PGA1_c29050 at 3045.733 kb on + strand, within PGA1_c29050 at 3045.733 kb on + strand, within PGA1_c29050 at 3045.742 kb on - strand, within PGA1_c29050 at 3045.787 kb on + strand, within PGA1_c29050 at 3045.835 kb on + strand, within PGA1_c29050 at 3045.842 kb on + strand, within PGA1_c29050 at 3045.843 kb on - strand, within PGA1_c29050 at 3045.938 kb on + strand at 3045.941 kb on - strand at 3045.958 kb on + strand at 3045.961 kb on - strand at 3045.967 kb on - strand at 3046.003 kb on + strand at 3046.011 kb on - strand at 3046.084 kb on + strand at 3046.194 kb on + strand, within PGA1_c29060 at 3046.252 kb on - strand, within PGA1_c29060 at 3046.405 kb on + strand, within PGA1_c29060 at 3046.505 kb on - strand, within PGA1_c29060 at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.638 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.645 kb on + strand at 3046.646 kb on - strand at 3046.651 kb on + strand at 3046.653 kb on - strand at 3046.663 kb on - strand at 3046.688 kb on - strand at 3046.698 kb on - strand at 3046.705 kb on + strand at 3046.816 kb on - strand, within PGA1_c29070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,044,001 - PGA1_c29030 0.82 -1.3 3,044,067 + PGA1_c29030 0.90 +0.6 3,044,067 + PGA1_c29030 0.90 -0.6 3,044,067 + PGA1_c29030 0.90 +0.2 3,044,104 - +0.4 3,044,151 - +0.2 3,044,152 + +0.6 3,044,164 - +0.1 3,044,165 + +0.7 3,044,173 - -0.0 3,044,173 - +0.4 3,044,173 - -0.5 3,044,173 - +0.3 3,044,173 - +0.5 3,044,198 + +0.8 3,044,198 + +1.4 3,044,202 + +0.8 3,044,202 + +0.0 3,044,202 + +0.1 3,044,210 - -0.5 3,044,210 - -0.9 3,044,210 - -1.7 3,044,235 - -0.5 3,044,261 + +0.1 3,044,264 - +0.0 3,044,269 - -1.1 3,044,269 - -0.6 3,044,304 + -1.7 3,044,312 - +0.5 3,044,319 + +0.0 3,044,319 + +0.7 3,044,319 + +1.2 3,044,319 + +0.7 3,044,319 + -0.5 3,044,319 + +1.1 3,044,327 - +1.1 3,044,327 - +0.5 3,044,327 - -0.0 3,044,327 - -0.1 3,044,327 - -0.4 3,044,327 - -0.6 3,044,334 - -0.5 3,044,361 - -0.1 3,044,381 + +0.6 3,044,381 + +0.7 3,044,381 + +0.5 3,044,389 - +0.7 3,044,389 - +0.4 3,044,410 - PGA1_c29040 0.12 +0.2 3,044,410 - PGA1_c29040 0.12 -0.4 3,044,431 + PGA1_c29040 0.15 +0.7 3,044,431 - PGA1_c29040 0.15 +0.3 3,044,437 + PGA1_c29040 0.16 +0.4 3,044,497 + PGA1_c29040 0.25 +0.2 3,044,526 + PGA1_c29040 0.30 -0.4 3,044,546 + PGA1_c29040 0.33 +0.7 3,044,570 + PGA1_c29040 0.37 +2.1 3,044,570 + PGA1_c29040 0.37 +0.5 3,044,578 + PGA1_c29040 0.38 -0.2 3,044,583 + PGA1_c29040 0.39 -0.2 3,044,583 + PGA1_c29040 0.39 +0.6 3,044,583 + PGA1_c29040 0.39 +1.0 3,044,586 - PGA1_c29040 0.39 -0.5 3,044,591 - PGA1_c29040 0.40 +1.5 3,044,761 + PGA1_c29040 0.66 -0.1 3,044,761 + PGA1_c29040 0.66 +1.2 3,044,769 - PGA1_c29040 0.67 +1.2 3,044,854 + PGA1_c29040 0.81 -0.5 3,044,893 + PGA1_c29040 0.87 +0.9 3,044,901 - PGA1_c29040 0.88 +0.0 3,045,042 + +0.1 3,045,042 + -0.2 3,045,042 + +0.5 3,045,050 - +0.2 3,045,246 - PGA1_c29050 0.27 +0.1 3,045,246 - PGA1_c29050 0.27 +0.3 3,045,250 + PGA1_c29050 0.28 +0.5 3,045,258 - PGA1_c29050 0.29 +0.3 3,045,378 + PGA1_c29050 0.41 -0.6 3,045,554 + PGA1_c29050 0.58 +0.7 3,045,636 - PGA1_c29050 0.67 +1.0 3,045,648 - PGA1_c29050 0.68 -0.6 3,045,665 + PGA1_c29050 0.70 +0.1 3,045,670 + PGA1_c29050 0.70 -0.0 3,045,670 + PGA1_c29050 0.70 +1.0 3,045,678 - PGA1_c29050 0.71 +1.3 3,045,680 + PGA1_c29050 0.71 -0.2 3,045,688 - PGA1_c29050 0.72 +1.2 3,045,729 + PGA1_c29050 0.76 +0.9 3,045,733 + PGA1_c29050 0.77 +0.9 3,045,733 + PGA1_c29050 0.77 -0.4 3,045,742 - PGA1_c29050 0.77 +1.8 3,045,787 + PGA1_c29050 0.82 -1.5 3,045,835 + PGA1_c29050 0.87 -0.4 3,045,842 + PGA1_c29050 0.88 +0.1 3,045,843 - PGA1_c29050 0.88 -0.2 3,045,938 + +0.1 3,045,941 - -0.3 3,045,958 + -0.0 3,045,961 - +0.3 3,045,967 - +1.0 3,046,003 + +0.4 3,046,011 - -0.7 3,046,084 + +0.9 3,046,194 + PGA1_c29060 0.26 +0.4 3,046,252 - PGA1_c29060 0.38 -0.9 3,046,405 + PGA1_c29060 0.69 -0.4 3,046,505 - PGA1_c29060 0.90 -0.2 3,046,638 + +0.1 3,046,638 + -0.3 3,046,638 + +0.7 3,046,645 + -0.3 3,046,645 + -0.2 3,046,645 + -0.0 3,046,646 - +0.1 3,046,651 + +0.4 3,046,653 - -0.1 3,046,663 - -0.3 3,046,688 - -0.8 3,046,698 - +0.2 3,046,705 + +0.5 3,046,816 - PGA1_c29070 0.20 +0.4
Or see this region's nucleotide sequence