Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27240

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27230 and PGA1_c27240 are separated by 123 nucleotidesPGA1_c27240 and PGA1_c27250 are separated by 332 nucleotides PGA1_c27230: PGA1_c27230 - transcriptional regulator, lysR family, at 2,837,619 to 2,838,476 _c27230 PGA1_c27240: PGA1_c27240 - hypothetical protein, at 2,838,600 to 2,838,971 _c27240 PGA1_c27250: PGA1_c27250 - putative response regulator, at 2,839,304 to 2,839,996 _c27250 Position (kb) 2838 2839Strain fitness (log2 ratio) -2 -1 0 1 2at 2837.612 kb on - strandat 2837.630 kb on + strandat 2837.632 kb on + strandat 2837.638 kb on - strandat 2837.640 kb on - strandat 2837.673 kb on - strandat 2837.686 kb on + strandat 2837.773 kb on + strand, within PGA1_c27230at 2837.795 kb on + strand, within PGA1_c27230at 2837.803 kb on + strand, within PGA1_c27230at 2837.803 kb on + strand, within PGA1_c27230at 2837.861 kb on - strand, within PGA1_c27230at 2837.949 kb on - strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.953 kb on + strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2837.961 kb on - strand, within PGA1_c27230at 2838.031 kb on - strand, within PGA1_c27230at 2838.033 kb on + strand, within PGA1_c27230at 2838.041 kb on - strand, within PGA1_c27230at 2838.072 kb on - strand, within PGA1_c27230at 2838.072 kb on - strand, within PGA1_c27230at 2838.074 kb on - strand, within PGA1_c27230at 2838.077 kb on + strand, within PGA1_c27230at 2838.098 kb on + strand, within PGA1_c27230at 2838.103 kb on + strand, within PGA1_c27230at 2838.103 kb on + strand, within PGA1_c27230at 2838.111 kb on - strand, within PGA1_c27230at 2838.120 kb on + strand, within PGA1_c27230at 2838.120 kb on + strand, within PGA1_c27230at 2838.128 kb on - strand, within PGA1_c27230at 2838.128 kb on - strand, within PGA1_c27230at 2838.158 kb on + strand, within PGA1_c27230at 2838.166 kb on - strand, within PGA1_c27230at 2838.238 kb on + strand, within PGA1_c27230at 2838.352 kb on - strand, within PGA1_c27230at 2838.352 kb on - strand, within PGA1_c27230at 2838.375 kb on + strand, within PGA1_c27230at 2838.375 kb on + strand, within PGA1_c27230at 2838.375 kb on + strand, within PGA1_c27230at 2838.383 kb on - strand, within PGA1_c27230at 2838.383 kb on - strand, within PGA1_c27230at 2838.393 kb on - strandat 2838.465 kb on + strandat 2838.729 kb on + strand, within PGA1_c27240at 2838.765 kb on - strand, within PGA1_c27240at 2838.791 kb on - strand, within PGA1_c27240at 2838.942 kb on + strandat 2838.976 kb on + strandat 2838.976 kb on + strandat 2838.983 kb on + strandat 2838.992 kb on - strandat 2839.018 kb on + strandat 2839.018 kb on + strandat 2839.115 kb on - strandat 2839.196 kb on + strandat 2839.196 kb on + strandat 2839.196 kb on + strandat 2839.196 kb on + strandat 2839.196 kb on + strandat 2839.196 kb on + strandat 2839.204 kb on - strandat 2839.204 kb on - strandat 2839.204 kb on - strandat 2839.217 kb on + strandat 2839.218 kb on - strandat 2839.227 kb on - strandat 2839.237 kb on - strandat 2839.291 kb on - strandat 2839.306 kb on + strandat 2839.311 kb on + strandat 2839.314 kb on - strandat 2839.319 kb on - strandat 2839.319 kb on - strandat 2839.319 kb on - strandat 2839.319 kb on - strandat 2839.346 kb on - strandat 2839.346 kb on - strandat 2839.356 kb on - strandat 2839.368 kb on + strandat 2839.429 kb on - strand, within PGA1_c27250at 2839.437 kb on + strand, within PGA1_c27250at 2839.439 kb on + strand, within PGA1_c27250at 2839.447 kb on + strand, within PGA1_c27250at 2839.447 kb on + strand, within PGA1_c27250at 2839.544 kb on - strand, within PGA1_c27250at 2839.664 kb on - strand, within PGA1_c27250at 2839.669 kb on + strand, within PGA1_c27250at 2839.757 kb on + strand, within PGA1_c27250at 2839.778 kb on + strand, within PGA1_c27250at 2839.804 kb on - strand, within PGA1_c27250at 2839.809 kb on - strand, within PGA1_c27250at 2839.869 kb on + strand, within PGA1_c27250at 2839.875 kb on + strand, within PGA1_c27250at 2839.877 kb on - strand, within PGA1_c27250at 2839.877 kb on - strand, within PGA1_c27250at 2839.934 kb on - strandat 2839.952 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,837,612 - +0.3
2,837,630 + -0.3
2,837,632 + +0.7
2,837,638 - -0.3
2,837,640 - -0.3
2,837,673 - +0.7
2,837,686 + -0.6
2,837,773 + PGA1_c27230 0.18 +0.3
2,837,795 + PGA1_c27230 0.21 -0.6
2,837,803 + PGA1_c27230 0.21 +0.6
2,837,803 + PGA1_c27230 0.21 +0.8
2,837,861 - PGA1_c27230 0.28 +0.7
2,837,949 - PGA1_c27230 0.38 +0.3
2,837,953 + PGA1_c27230 0.39 -0.4
2,837,953 + PGA1_c27230 0.39 +1.1
2,837,953 + PGA1_c27230 0.39 -0.8
2,837,953 + PGA1_c27230 0.39 -0.1
2,837,953 + PGA1_c27230 0.39 -0.8
2,837,953 + PGA1_c27230 0.39 +0.2
2,837,953 + PGA1_c27230 0.39 -0.3
2,837,953 + PGA1_c27230 0.39 +0.3
2,837,953 + PGA1_c27230 0.39 +0.3
2,837,961 - PGA1_c27230 0.40 -0.2
2,837,961 - PGA1_c27230 0.40 +1.0
2,837,961 - PGA1_c27230 0.40 +0.5
2,837,961 - PGA1_c27230 0.40 +0.0
2,837,961 - PGA1_c27230 0.40 +0.0
2,837,961 - PGA1_c27230 0.40 +1.0
2,837,961 - PGA1_c27230 0.40 -1.0
2,837,961 - PGA1_c27230 0.40 -0.1
2,837,961 - PGA1_c27230 0.40 +0.3
2,837,961 - PGA1_c27230 0.40 -0.0
2,837,961 - PGA1_c27230 0.40 -0.5
2,837,961 - PGA1_c27230 0.40 +0.9
2,837,961 - PGA1_c27230 0.40 +0.9
2,837,961 - PGA1_c27230 0.40 -0.1
2,837,961 - PGA1_c27230 0.40 +0.2
2,838,031 - PGA1_c27230 0.48 -1.0
2,838,033 + PGA1_c27230 0.48 -0.6
2,838,041 - PGA1_c27230 0.49 +0.8
2,838,072 - PGA1_c27230 0.53 +0.0
2,838,072 - PGA1_c27230 0.53 -0.2
2,838,074 - PGA1_c27230 0.53 -2.3
2,838,077 + PGA1_c27230 0.53 +0.8
2,838,098 + PGA1_c27230 0.56 +0.2
2,838,103 + PGA1_c27230 0.56 -0.4
2,838,103 + PGA1_c27230 0.56 +0.4
2,838,111 - PGA1_c27230 0.57 +0.0
2,838,120 + PGA1_c27230 0.58 -0.9
2,838,120 + PGA1_c27230 0.58 -1.0
2,838,128 - PGA1_c27230 0.59 +0.5
2,838,128 - PGA1_c27230 0.59 -0.3
2,838,158 + PGA1_c27230 0.63 -0.5
2,838,166 - PGA1_c27230 0.64 +0.6
2,838,238 + PGA1_c27230 0.72 +0.6
2,838,352 - PGA1_c27230 0.85 -0.7
2,838,352 - PGA1_c27230 0.85 +0.2
2,838,375 + PGA1_c27230 0.88 +0.1
2,838,375 + PGA1_c27230 0.88 +0.2
2,838,375 + PGA1_c27230 0.88 -1.8
2,838,383 - PGA1_c27230 0.89 +0.2
2,838,383 - PGA1_c27230 0.89 -0.2
2,838,393 - +0.0
2,838,465 + +0.0
2,838,729 + PGA1_c27240 0.35 +0.0
2,838,765 - PGA1_c27240 0.44 +0.9
2,838,791 - PGA1_c27240 0.51 +1.9
2,838,942 + +0.1
2,838,976 + +0.8
2,838,976 + -0.6
2,838,983 + +0.3
2,838,992 - +0.9
2,839,018 + +0.3
2,839,018 + +0.9
2,839,115 - -0.5
2,839,196 + -0.8
2,839,196 + +0.1
2,839,196 + +0.9
2,839,196 + +0.3
2,839,196 + +0.8
2,839,196 + +0.6
2,839,204 - -0.2
2,839,204 - -0.5
2,839,204 - -0.3
2,839,217 + -0.5
2,839,218 - +0.3
2,839,227 - +0.4
2,839,237 - -1.0
2,839,291 - -0.7
2,839,306 + -0.5
2,839,311 + +1.9
2,839,314 - -0.4
2,839,319 - -0.2
2,839,319 - -0.3
2,839,319 - -0.2
2,839,319 - -0.5
2,839,346 - -0.2
2,839,346 - -0.9
2,839,356 - +1.0
2,839,368 + -0.8
2,839,429 - PGA1_c27250 0.18 -0.3
2,839,437 + PGA1_c27250 0.19 +0.5
2,839,439 + PGA1_c27250 0.19 +0.2
2,839,447 + PGA1_c27250 0.21 -0.5
2,839,447 + PGA1_c27250 0.21 +0.4
2,839,544 - PGA1_c27250 0.35 +0.7
2,839,664 - PGA1_c27250 0.52 +0.3
2,839,669 + PGA1_c27250 0.53 -0.2
2,839,757 + PGA1_c27250 0.65 +0.6
2,839,778 + PGA1_c27250 0.68 -0.2
2,839,804 - PGA1_c27250 0.72 -0.5
2,839,809 - PGA1_c27250 0.73 -0.8
2,839,869 + PGA1_c27250 0.82 -0.4
2,839,875 + PGA1_c27250 0.82 -1.4
2,839,877 - PGA1_c27250 0.83 +0.0
2,839,877 - PGA1_c27250 0.83 -0.1
2,839,934 - +0.3
2,839,952 - +0.2

Or see this region's nucleotide sequence