Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27180

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27170 and PGA1_c27180 are separated by 118 nucleotidesPGA1_c27180 and PGA1_c27190 are separated by 82 nucleotides PGA1_c27170: PGA1_c27170 - TRAP transporter, subunit DctP, at 2,830,363 to 2,831,397 _c27170 PGA1_c27180: PGA1_c27180 - putative glutamine synthetase, at 2,831,516 to 2,832,868 _c27180 PGA1_c27190: PGA1_c27190 - aldehyde dehydrogenase, at 2,832,951 to 2,834,333 _c27190 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -2 -1 0 1at 2830.541 kb on + strand, within PGA1_c27170at 2830.560 kb on + strand, within PGA1_c27170at 2830.567 kb on + strand, within PGA1_c27170at 2830.568 kb on - strand, within PGA1_c27170at 2830.568 kb on - strand, within PGA1_c27170at 2830.578 kb on + strand, within PGA1_c27170at 2830.578 kb on + strand, within PGA1_c27170at 2830.611 kb on + strand, within PGA1_c27170at 2830.619 kb on + strand, within PGA1_c27170at 2830.619 kb on - strand, within PGA1_c27170at 2830.619 kb on - strand, within PGA1_c27170at 2830.643 kb on - strand, within PGA1_c27170at 2830.692 kb on + strand, within PGA1_c27170at 2830.720 kb on - strand, within PGA1_c27170at 2830.750 kb on + strand, within PGA1_c27170at 2830.755 kb on + strand, within PGA1_c27170at 2830.797 kb on - strand, within PGA1_c27170at 2830.802 kb on - strand, within PGA1_c27170at 2830.867 kb on + strand, within PGA1_c27170at 2830.874 kb on - strand, within PGA1_c27170at 2830.875 kb on + strand, within PGA1_c27170at 2830.938 kb on + strand, within PGA1_c27170at 2831.010 kb on + strand, within PGA1_c27170at 2831.018 kb on - strand, within PGA1_c27170at 2831.027 kb on + strand, within PGA1_c27170at 2831.027 kb on + strand, within PGA1_c27170at 2831.088 kb on - strand, within PGA1_c27170at 2831.089 kb on - strand, within PGA1_c27170at 2831.103 kb on - strand, within PGA1_c27170at 2831.150 kb on + strand, within PGA1_c27170at 2831.150 kb on + strand, within PGA1_c27170at 2831.150 kb on + strand, within PGA1_c27170at 2831.150 kb on + strand, within PGA1_c27170at 2831.158 kb on - strand, within PGA1_c27170at 2831.158 kb on - strand, within PGA1_c27170at 2831.164 kb on + strand, within PGA1_c27170at 2831.173 kb on + strand, within PGA1_c27170at 2831.181 kb on - strand, within PGA1_c27170at 2831.181 kb on - strand, within PGA1_c27170at 2831.198 kb on + strand, within PGA1_c27170at 2831.198 kb on + strand, within PGA1_c27170at 2831.206 kb on - strand, within PGA1_c27170at 2831.225 kb on + strand, within PGA1_c27170at 2831.264 kb on + strand, within PGA1_c27170at 2831.266 kb on + strand, within PGA1_c27170at 2831.266 kb on + strand, within PGA1_c27170at 2831.266 kb on + strand, within PGA1_c27170at 2831.272 kb on - strand, within PGA1_c27170at 2831.274 kb on - strand, within PGA1_c27170at 2831.316 kb on + strandat 2831.321 kb on + strandat 2831.322 kb on + strandat 2831.329 kb on - strandat 2831.329 kb on - strandat 2831.329 kb on - strandat 2831.372 kb on - strandat 2831.379 kb on + strandat 2831.380 kb on + strandat 2831.397 kb on + strandat 2831.397 kb on + strandat 2831.405 kb on - strandat 2831.405 kb on - strandat 2831.405 kb on - strandat 2831.440 kb on + strandat 2831.446 kb on - strandat 2831.500 kb on + strandat 2831.507 kb on + strandat 2831.507 kb on + strandat 2831.520 kb on - strandat 2831.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,830,541 + PGA1_c27170 0.17 -0.6
2,830,560 + PGA1_c27170 0.19 -0.7
2,830,567 + PGA1_c27170 0.20 +0.7
2,830,568 - PGA1_c27170 0.20 -1.7
2,830,568 - PGA1_c27170 0.20 +0.2
2,830,578 + PGA1_c27170 0.21 -0.0
2,830,578 + PGA1_c27170 0.21 +0.2
2,830,611 + PGA1_c27170 0.24 -0.3
2,830,619 + PGA1_c27170 0.25 +0.3
2,830,619 - PGA1_c27170 0.25 -0.8
2,830,619 - PGA1_c27170 0.25 +0.3
2,830,643 - PGA1_c27170 0.27 -0.1
2,830,692 + PGA1_c27170 0.32 -0.1
2,830,720 - PGA1_c27170 0.34 +0.4
2,830,750 + PGA1_c27170 0.37 -0.8
2,830,755 + PGA1_c27170 0.38 +0.5
2,830,797 - PGA1_c27170 0.42 -0.1
2,830,802 - PGA1_c27170 0.42 -1.4
2,830,867 + PGA1_c27170 0.49 +0.2
2,830,874 - PGA1_c27170 0.49 +0.1
2,830,875 + PGA1_c27170 0.49 +0.4
2,830,938 + PGA1_c27170 0.56 +0.1
2,831,010 + PGA1_c27170 0.63 +1.3
2,831,018 - PGA1_c27170 0.63 -0.3
2,831,027 + PGA1_c27170 0.64 -0.3
2,831,027 + PGA1_c27170 0.64 -0.5
2,831,088 - PGA1_c27170 0.70 -1.0
2,831,089 - PGA1_c27170 0.70 +0.7
2,831,103 - PGA1_c27170 0.71 -0.5
2,831,150 + PGA1_c27170 0.76 -0.0
2,831,150 + PGA1_c27170 0.76 +0.4
2,831,150 + PGA1_c27170 0.76 +0.2
2,831,150 + PGA1_c27170 0.76 -1.7
2,831,158 - PGA1_c27170 0.77 -1.8
2,831,158 - PGA1_c27170 0.77 +0.2
2,831,164 + PGA1_c27170 0.77 -0.4
2,831,173 + PGA1_c27170 0.78 -1.1
2,831,181 - PGA1_c27170 0.79 -1.9
2,831,181 - PGA1_c27170 0.79 -0.5
2,831,198 + PGA1_c27170 0.81 -1.0
2,831,198 + PGA1_c27170 0.81 +0.1
2,831,206 - PGA1_c27170 0.81 +0.1
2,831,225 + PGA1_c27170 0.83 -0.1
2,831,264 + PGA1_c27170 0.87 +0.4
2,831,266 + PGA1_c27170 0.87 -0.2
2,831,266 + PGA1_c27170 0.87 +0.1
2,831,266 + PGA1_c27170 0.87 +0.5
2,831,272 - PGA1_c27170 0.88 -0.9
2,831,274 - PGA1_c27170 0.88 -0.9
2,831,316 + +0.7
2,831,321 + -0.8
2,831,322 + +0.4
2,831,329 - -0.4
2,831,329 - -0.6
2,831,329 - -0.3
2,831,372 - -0.2
2,831,379 + +0.5
2,831,380 + -0.1
2,831,397 + +0.6
2,831,397 + +0.7
2,831,405 - -0.8
2,831,405 - +0.3
2,831,405 - -0.1
2,831,440 + -1.5
2,831,446 - +0.2
2,831,500 + -0.2
2,831,507 + -0.4
2,831,507 + -0.4
2,831,520 - +0.9
2,831,520 - +0.5

Or see this region's nucleotide sequence