Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27100 and PGA1_c27110 are separated by 193 nucleotides PGA1_c27110 and PGA1_c27120 are separated by 119 nucleotides PGA1_c27120 and PGA1_c27130 are separated by 93 nucleotides
PGA1_c27100: PGA1_c27100 - putative ferritin, at 2,825,006 to 2,825,503
_c27100
PGA1_c27110: PGA1_c27110 - Protein of unknown function (DUF1328)., at 2,825,697 to 2,825,861
_c27110
PGA1_c27120: PGA1_c27120 - hypothetical protein, at 2,825,981 to 2,826,295
_c27120
PGA1_c27130: PGA1_c27130 - putative HTH-type transcriptional regulator, at 2,826,389 to 2,827,261
_c27130
Position (kb)
2825
2826
2827 Strain fitness (log2 ratio)
-2
-1
0
1 at 2825.003 kb on + strand at 2825.003 kb on + strand at 2825.011 kb on - strand at 2825.011 kb on - strand at 2825.011 kb on - strand at 2825.012 kb on + strand at 2825.069 kb on + strand, within PGA1_c27100 at 2825.069 kb on + strand, within PGA1_c27100 at 2825.074 kb on + strand, within PGA1_c27100 at 2825.077 kb on - strand, within PGA1_c27100 at 2825.103 kb on + strand, within PGA1_c27100 at 2825.143 kb on + strand, within PGA1_c27100 at 2825.163 kb on - strand, within PGA1_c27100 at 2825.170 kb on - strand, within PGA1_c27100 at 2825.170 kb on - strand, within PGA1_c27100 at 2825.216 kb on - strand, within PGA1_c27100 at 2825.366 kb on + strand, within PGA1_c27100 at 2825.401 kb on - strand, within PGA1_c27100 at 2825.414 kb on - strand, within PGA1_c27100 at 2825.485 kb on - strand at 2825.496 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.537 kb on + strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.545 kb on - strand at 2825.557 kb on - strand at 2825.659 kb on + strand at 2825.675 kb on - strand at 2825.688 kb on - strand at 2825.704 kb on + strand at 2825.741 kb on + strand, within PGA1_c27110 at 2825.763 kb on + strand, within PGA1_c27110 at 2825.770 kb on - strand, within PGA1_c27110 at 2825.784 kb on + strand, within PGA1_c27110 at 2825.813 kb on + strand, within PGA1_c27110 at 2825.813 kb on + strand, within PGA1_c27110 at 2825.825 kb on - strand, within PGA1_c27110 at 2825.838 kb on + strand, within PGA1_c27110 at 2825.846 kb on - strand at 2825.846 kb on - strand at 2825.856 kb on - strand at 2825.874 kb on - strand at 2825.880 kb on + strand at 2825.887 kb on + strand at 2825.890 kb on + strand at 2825.907 kb on - strand at 2826.079 kb on + strand, within PGA1_c27120 at 2826.080 kb on + strand, within PGA1_c27120 at 2826.087 kb on - strand, within PGA1_c27120 at 2826.106 kb on + strand, within PGA1_c27120 at 2826.106 kb on + strand, within PGA1_c27120 at 2826.113 kb on + strand, within PGA1_c27120 at 2826.158 kb on + strand, within PGA1_c27120 at 2826.158 kb on + strand, within PGA1_c27120 at 2826.185 kb on + strand, within PGA1_c27120 at 2826.246 kb on - strand, within PGA1_c27120 at 2826.288 kb on - strand at 2826.294 kb on + strand at 2826.294 kb on + strand at 2826.318 kb on + strand at 2826.326 kb on - strand at 2826.374 kb on + strand at 2826.374 kb on + strand at 2826.417 kb on - strand at 2826.455 kb on + strand at 2826.463 kb on - strand at 2826.463 kb on - strand at 2826.463 kb on - strand at 2826.463 kb on - strand at 2826.463 kb on - strand at 2826.463 kb on - strand at 2826.547 kb on + strand, within PGA1_c27130 at 2826.550 kb on - strand, within PGA1_c27130 at 2826.556 kb on + strand, within PGA1_c27130 at 2826.824 kb on - strand, within PGA1_c27130 at 2826.837 kb on + strand, within PGA1_c27130 at 2826.863 kb on - strand, within PGA1_c27130 at 2826.887 kb on - strand, within PGA1_c27130 at 2826.887 kb on - strand, within PGA1_c27130 at 2826.930 kb on - strand, within PGA1_c27130 at 2826.934 kb on - strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2826.995 kb on + strand, within PGA1_c27130 at 2827.003 kb on - strand, within PGA1_c27130 at 2827.003 kb on - strand, within PGA1_c27130 at 2827.003 kb on - strand, within PGA1_c27130 at 2827.040 kb on + strand, within PGA1_c27130 at 2827.209 kb on - strand at 2827.209 kb on - strand at 2827.269 kb on - strand at 2827.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,825,003 + -0.1 2,825,003 + +0.2 2,825,011 - -0.4 2,825,011 - +0.7 2,825,011 - +0.5 2,825,012 + -0.0 2,825,069 + PGA1_c27100 0.13 -0.1 2,825,069 + PGA1_c27100 0.13 +0.1 2,825,074 + PGA1_c27100 0.14 -0.4 2,825,077 - PGA1_c27100 0.14 -0.3 2,825,103 + PGA1_c27100 0.19 -1.2 2,825,143 + PGA1_c27100 0.28 -0.2 2,825,163 - PGA1_c27100 0.32 -0.9 2,825,170 - PGA1_c27100 0.33 -0.1 2,825,170 - PGA1_c27100 0.33 -1.9 2,825,216 - PGA1_c27100 0.42 +0.2 2,825,366 + PGA1_c27100 0.72 -1.4 2,825,401 - PGA1_c27100 0.79 +0.1 2,825,414 - PGA1_c27100 0.82 -0.0 2,825,485 - -0.4 2,825,496 + -1.2 2,825,537 + -0.3 2,825,537 + -0.1 2,825,537 + +0.2 2,825,537 + -0.2 2,825,545 - +0.0 2,825,545 - +0.9 2,825,545 - +0.4 2,825,545 - +0.3 2,825,545 - -0.1 2,825,545 - +0.8 2,825,545 - +0.3 2,825,557 - +0.2 2,825,659 + +0.3 2,825,675 - -0.1 2,825,688 - +0.3 2,825,704 + -0.1 2,825,741 + PGA1_c27110 0.27 +0.6 2,825,763 + PGA1_c27110 0.40 -1.7 2,825,770 - PGA1_c27110 0.44 +0.1 2,825,784 + PGA1_c27110 0.53 +0.0 2,825,813 + PGA1_c27110 0.70 -0.0 2,825,813 + PGA1_c27110 0.70 +0.1 2,825,825 - PGA1_c27110 0.78 -0.1 2,825,838 + PGA1_c27110 0.85 +0.7 2,825,846 - +0.9 2,825,846 - -0.1 2,825,856 - -0.0 2,825,874 - +0.5 2,825,880 + -0.1 2,825,887 + -0.7 2,825,890 + +0.7 2,825,907 - +0.0 2,826,079 + PGA1_c27120 0.31 +0.1 2,826,080 + PGA1_c27120 0.31 -0.0 2,826,087 - PGA1_c27120 0.34 -0.2 2,826,106 + PGA1_c27120 0.40 +0.8 2,826,106 + PGA1_c27120 0.40 +0.4 2,826,113 + PGA1_c27120 0.42 +0.6 2,826,158 + PGA1_c27120 0.56 +1.2 2,826,158 + PGA1_c27120 0.56 -0.7 2,826,185 + PGA1_c27120 0.65 +0.1 2,826,246 - PGA1_c27120 0.84 +0.4 2,826,288 - +0.2 2,826,294 + +0.3 2,826,294 + +0.9 2,826,318 + -0.1 2,826,326 - -0.2 2,826,374 + +0.0 2,826,374 + +0.6 2,826,417 - +0.6 2,826,455 + -0.5 2,826,463 - -0.7 2,826,463 - -0.6 2,826,463 - -0.4 2,826,463 - +0.2 2,826,463 - +0.0 2,826,463 - -0.0 2,826,547 + PGA1_c27130 0.18 +0.5 2,826,550 - PGA1_c27130 0.18 -0.4 2,826,556 + PGA1_c27130 0.19 +0.1 2,826,824 - PGA1_c27130 0.50 +0.2 2,826,837 + PGA1_c27130 0.51 -0.6 2,826,863 - PGA1_c27130 0.54 +0.5 2,826,887 - PGA1_c27130 0.57 +0.5 2,826,887 - PGA1_c27130 0.57 +0.4 2,826,930 - PGA1_c27130 0.62 +0.5 2,826,934 - PGA1_c27130 0.62 -2.0 2,826,995 + PGA1_c27130 0.69 -0.4 2,826,995 + PGA1_c27130 0.69 +0.2 2,826,995 + PGA1_c27130 0.69 +0.3 2,826,995 + PGA1_c27130 0.69 -0.8 2,826,995 + PGA1_c27130 0.69 +0.2 2,826,995 + PGA1_c27130 0.69 +0.1 2,827,003 - PGA1_c27130 0.70 -0.0 2,827,003 - PGA1_c27130 0.70 +0.0 2,827,003 - PGA1_c27130 0.70 -0.2 2,827,040 + PGA1_c27130 0.75 -0.1 2,827,209 - +0.3 2,827,209 - +0.3 2,827,269 - -0.3 2,827,275 - -0.6
Or see this region's nucleotide sequence