Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26890

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26880 and PGA1_c26890 are separated by 66 nucleotidesPGA1_c26890 and PGA1_c26900 are separated by 328 nucleotides PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026 _c26880 PGA1_c26890: PGA1_c26890 - putative endoribonuclease, at 2,806,093 to 2,806,440 _c26890 PGA1_c26900: PGA1_c26900 - putative lipoprotein, at 2,806,769 to 2,807,800 _c26900 Position (kb) 2806 2807Strain fitness (log2 ratio) -2 -1 0 1at 2805.348 kb on + strand, within PGA1_c26880at 2806.172 kb on + strand, within PGA1_c26890at 2806.178 kb on + strand, within PGA1_c26890at 2806.196 kb on + strand, within PGA1_c26890at 2806.204 kb on - strand, within PGA1_c26890at 2806.257 kb on - strand, within PGA1_c26890at 2806.264 kb on + strand, within PGA1_c26890at 2806.285 kb on + strand, within PGA1_c26890at 2806.337 kb on - strand, within PGA1_c26890at 2806.337 kb on - strand, within PGA1_c26890at 2806.442 kb on - strandat 2806.477 kb on + strandat 2806.480 kb on - strandat 2806.625 kb on + strandat 2806.633 kb on - strandat 2806.640 kb on - strandat 2806.679 kb on + strandat 2806.705 kb on - strandat 2806.755 kb on - strandat 2806.850 kb on - strandat 2806.850 kb on - strandat 2806.868 kb on + strandat 2806.881 kb on + strand, within PGA1_c26900at 2806.881 kb on + strand, within PGA1_c26900at 2806.889 kb on - strand, within PGA1_c26900at 2806.938 kb on - strand, within PGA1_c26900at 2806.987 kb on + strand, within PGA1_c26900at 2806.987 kb on + strand, within PGA1_c26900at 2806.989 kb on + strand, within PGA1_c26900at 2807.019 kb on + strand, within PGA1_c26900at 2807.025 kb on + strand, within PGA1_c26900at 2807.129 kb on + strand, within PGA1_c26900at 2807.166 kb on + strand, within PGA1_c26900at 2807.176 kb on + strand, within PGA1_c26900at 2807.181 kb on + strand, within PGA1_c26900at 2807.181 kb on + strand, within PGA1_c26900at 2807.189 kb on - strand, within PGA1_c26900at 2807.222 kb on - strand, within PGA1_c26900at 2807.222 kb on - strand, within PGA1_c26900at 2807.325 kb on - strand, within PGA1_c26900at 2807.382 kb on + strand, within PGA1_c26900at 2807.390 kb on - strand, within PGA1_c26900at 2807.431 kb on - strand, within PGA1_c26900at 2807.438 kb on + strand, within PGA1_c26900at 2807.438 kb on + strand, within PGA1_c26900

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,805,348 + PGA1_c26880 0.37 +0.5
2,806,172 + PGA1_c26890 0.23 +0.6
2,806,178 + PGA1_c26890 0.24 +0.0
2,806,196 + PGA1_c26890 0.30 -0.9
2,806,204 - PGA1_c26890 0.32 +1.2
2,806,257 - PGA1_c26890 0.47 +0.6
2,806,264 + PGA1_c26890 0.49 +1.3
2,806,285 + PGA1_c26890 0.55 +1.6
2,806,337 - PGA1_c26890 0.70 +0.3
2,806,337 - PGA1_c26890 0.70 +0.1
2,806,442 - +0.1
2,806,477 + +0.2
2,806,480 - -0.1
2,806,625 + -0.1
2,806,633 - -0.3
2,806,640 - -1.5
2,806,679 + -0.1
2,806,705 - +0.2
2,806,755 - -0.5
2,806,850 - -0.3
2,806,850 - +0.1
2,806,868 + -0.3
2,806,881 + PGA1_c26900 0.11 -0.5
2,806,881 + PGA1_c26900 0.11 -0.1
2,806,889 - PGA1_c26900 0.12 -0.4
2,806,938 - PGA1_c26900 0.16 -0.4
2,806,987 + PGA1_c26900 0.21 -0.1
2,806,987 + PGA1_c26900 0.21 -0.4
2,806,989 + PGA1_c26900 0.21 +0.1
2,807,019 + PGA1_c26900 0.24 +0.6
2,807,025 + PGA1_c26900 0.25 +0.3
2,807,129 + PGA1_c26900 0.35 -1.5
2,807,166 + PGA1_c26900 0.38 +0.3
2,807,176 + PGA1_c26900 0.39 +0.1
2,807,181 + PGA1_c26900 0.40 -2.5
2,807,181 + PGA1_c26900 0.40 -0.5
2,807,189 - PGA1_c26900 0.41 +1.0
2,807,222 - PGA1_c26900 0.44 +0.6
2,807,222 - PGA1_c26900 0.44 -0.7
2,807,325 - PGA1_c26900 0.54 +0.5
2,807,382 + PGA1_c26900 0.59 -0.7
2,807,390 - PGA1_c26900 0.60 -0.5
2,807,431 - PGA1_c26900 0.64 -0.1
2,807,438 + PGA1_c26900 0.65 -0.7
2,807,438 + PGA1_c26900 0.65 +0.5

Or see this region's nucleotide sequence