Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26850

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26840 and PGA1_c26850 are separated by 392 nucleotidesPGA1_c26850 and PGA1_c26860 overlap by 4 nucleotidesPGA1_c26860 and PGA1_c26870 are separated by 14 nucleotides PGA1_c26840: PGA1_c26840 - putative phenylacetic acid degradation operon negative regulatory protein, at 2,801,526 to 2,802,350 _c26840 PGA1_c26850: PGA1_c26850 - Predicted metal-binding protein, at 2,802,743 to 2,803,168 _c26850 PGA1_c26860: PGA1_c26860 - putative iron transport system, ATP-binding protein, at 2,803,165 to 2,803,950 _c26860 PGA1_c26870: PGA1_c26870 - putative periplasmic binding protein, at 2,803,965 to 2,804,945 _c26870 Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -1 0 1at 2801.826 kb on - strand, within PGA1_c26840at 2801.831 kb on + strand, within PGA1_c26840at 2801.893 kb on - strand, within PGA1_c26840at 2801.897 kb on - strand, within PGA1_c26840at 2801.947 kb on + strand, within PGA1_c26840at 2801.955 kb on - strand, within PGA1_c26840at 2801.968 kb on - strand, within PGA1_c26840at 2802.139 kb on + strand, within PGA1_c26840at 2802.139 kb on + strand, within PGA1_c26840at 2802.147 kb on - strand, within PGA1_c26840at 2802.147 kb on - strand, within PGA1_c26840at 2802.147 kb on - strand, within PGA1_c26840at 2802.260 kb on - strand, within PGA1_c26840at 2802.321 kb on - strandat 2802.372 kb on + strandat 2802.382 kb on + strandat 2802.548 kb on - strandat 2802.758 kb on - strandat 2802.913 kb on + strand, within PGA1_c26850at 2802.913 kb on + strand, within PGA1_c26850at 2802.913 kb on + strand, within PGA1_c26850at 2802.913 kb on + strand, within PGA1_c26850at 2802.921 kb on - strand, within PGA1_c26850at 2802.921 kb on - strand, within PGA1_c26850at 2802.967 kb on + strand, within PGA1_c26850at 2803.961 kb on + strandat 2803.969 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,801,826 - PGA1_c26840 0.36 +0.4
2,801,831 + PGA1_c26840 0.37 -1.1
2,801,893 - PGA1_c26840 0.44 -1.0
2,801,897 - PGA1_c26840 0.45 -0.8
2,801,947 + PGA1_c26840 0.51 +0.4
2,801,955 - PGA1_c26840 0.52 +0.6
2,801,968 - PGA1_c26840 0.54 +0.1
2,802,139 + PGA1_c26840 0.74 +0.6
2,802,139 + PGA1_c26840 0.74 -0.2
2,802,147 - PGA1_c26840 0.75 +0.4
2,802,147 - PGA1_c26840 0.75 +0.5
2,802,147 - PGA1_c26840 0.75 +0.7
2,802,260 - PGA1_c26840 0.89 -0.1
2,802,321 - +0.2
2,802,372 + +0.2
2,802,382 + -1.1
2,802,548 - -1.3
2,802,758 - +0.0
2,802,913 + PGA1_c26850 0.40 -0.6
2,802,913 + PGA1_c26850 0.40 +0.8
2,802,913 + PGA1_c26850 0.40 -0.4
2,802,913 + PGA1_c26850 0.40 -1.1
2,802,921 - PGA1_c26850 0.42 +0.9
2,802,921 - PGA1_c26850 0.42 +0.4
2,802,967 + PGA1_c26850 0.53 +0.6
2,803,961 + +0.2
2,803,969 - -1.0

Or see this region's nucleotide sequence