Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c26240 and PGA1_c26250 are separated by 294 nucleotides PGA1_c26250 and PGA1_c26260 are separated by 36 nucleotides PGA1_c26260 and PGA1_c26270 are separated by 89 nucleotides
PGA1_c26240: PGA1_c26240 - putative lysyl-tRNA synthetase, at 2,731,699 to 2,733,342
_c26240
PGA1_c26250: PGA1_c26250 - Tellurite resistance protein, at 2,733,637 to 2,734,059
_c26250
PGA1_c26260: PGA1_c26260 - putative N-acetyltransferase, at 2,734,096 to 2,734,617
_c26260
PGA1_c26270: PGA1_c26270 - putative D-alanyl-D-alanine carboxypeptidase, at 2,734,707 to 2,736,191
_c26270
Position (kb)
2733
2734
2735 Strain fitness (log2 ratio)
-2
-1
0
1 at 2733.546 kb on - strand at 2733.592 kb on + strand at 2733.599 kb on + strand at 2733.602 kb on + strand at 2733.602 kb on + strand at 2733.610 kb on - strand at 2733.650 kb on + strand at 2733.659 kb on + strand at 2733.667 kb on - strand at 2733.667 kb on - strand at 2733.667 kb on - strand at 2733.667 kb on - strand at 2733.677 kb on + strand at 2733.698 kb on - strand, within PGA1_c26250 at 2733.728 kb on + strand, within PGA1_c26250 at 2733.728 kb on + strand, within PGA1_c26250 at 2733.736 kb on - strand, within PGA1_c26250 at 2733.820 kb on + strand, within PGA1_c26250 at 2733.940 kb on + strand, within PGA1_c26250 at 2733.964 kb on - strand, within PGA1_c26250 at 2734.036 kb on + strand at 2734.077 kb on - strand at 2734.077 kb on - strand at 2734.112 kb on - strand at 2734.138 kb on - strand at 2734.183 kb on - strand, within PGA1_c26260 at 2734.218 kb on + strand, within PGA1_c26260 at 2734.226 kb on - strand, within PGA1_c26260 at 2734.226 kb on - strand, within PGA1_c26260 at 2734.237 kb on + strand, within PGA1_c26260 at 2734.237 kb on + strand, within PGA1_c26260 at 2734.237 kb on + strand, within PGA1_c26260 at 2734.240 kb on - strand, within PGA1_c26260 at 2734.245 kb on - strand, within PGA1_c26260 at 2734.245 kb on - strand, within PGA1_c26260 at 2734.245 kb on - strand, within PGA1_c26260 at 2734.260 kb on + strand, within PGA1_c26260 at 2734.268 kb on - strand, within PGA1_c26260 at 2734.318 kb on - strand, within PGA1_c26260 at 2734.318 kb on - strand, within PGA1_c26260 at 2734.353 kb on - strand, within PGA1_c26260 at 2734.357 kb on + strand, within PGA1_c26260 at 2734.395 kb on + strand, within PGA1_c26260 at 2734.442 kb on - strand, within PGA1_c26260 at 2734.482 kb on + strand, within PGA1_c26260 at 2734.483 kb on + strand, within PGA1_c26260 at 2734.484 kb on - strand, within PGA1_c26260 at 2734.490 kb on + strand, within PGA1_c26260 at 2734.490 kb on - strand, within PGA1_c26260 at 2734.544 kb on - strand, within PGA1_c26260 at 2734.652 kb on - strand at 2734.654 kb on + strand at 2734.657 kb on - strand at 2734.722 kb on - strand at 2734.765 kb on - strand at 2734.788 kb on + strand at 2734.788 kb on + strand at 2734.813 kb on - strand at 2734.816 kb on + strand at 2734.829 kb on - strand at 2734.857 kb on + strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.865 kb on - strand, within PGA1_c26270 at 2734.869 kb on - strand, within PGA1_c26270 at 2734.918 kb on + strand, within PGA1_c26270 at 2734.958 kb on + strand, within PGA1_c26270 at 2734.967 kb on - strand, within PGA1_c26270 at 2734.998 kb on - strand, within PGA1_c26270 at 2735.002 kb on + strand, within PGA1_c26270 at 2735.046 kb on - strand, within PGA1_c26270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,733,546 - +0.1 2,733,592 + +0.8 2,733,599 + +0.6 2,733,602 + +0.7 2,733,602 + -1.1 2,733,610 - -0.9 2,733,650 + +0.4 2,733,659 + -0.3 2,733,667 - -0.3 2,733,667 - +0.8 2,733,667 - +0.2 2,733,667 - +0.7 2,733,677 + +0.6 2,733,698 - PGA1_c26250 0.14 +1.1 2,733,728 + PGA1_c26250 0.22 +0.4 2,733,728 + PGA1_c26250 0.22 +0.9 2,733,736 - PGA1_c26250 0.23 +1.3 2,733,820 + PGA1_c26250 0.43 -0.4 2,733,940 + PGA1_c26250 0.72 -0.1 2,733,964 - PGA1_c26250 0.77 -0.3 2,734,036 + +0.5 2,734,077 - -1.0 2,734,077 - -0.1 2,734,112 - -0.9 2,734,138 - +0.8 2,734,183 - PGA1_c26260 0.17 +0.6 2,734,218 + PGA1_c26260 0.23 +0.0 2,734,226 - PGA1_c26260 0.25 +1.1 2,734,226 - PGA1_c26260 0.25 +0.7 2,734,237 + PGA1_c26260 0.27 +1.4 2,734,237 + PGA1_c26260 0.27 +0.5 2,734,237 + PGA1_c26260 0.27 -0.0 2,734,240 - PGA1_c26260 0.28 +0.2 2,734,245 - PGA1_c26260 0.29 -0.3 2,734,245 - PGA1_c26260 0.29 -0.9 2,734,245 - PGA1_c26260 0.29 +0.6 2,734,260 + PGA1_c26260 0.31 +0.5 2,734,268 - PGA1_c26260 0.33 -0.2 2,734,318 - PGA1_c26260 0.43 +0.1 2,734,318 - PGA1_c26260 0.43 +0.4 2,734,353 - PGA1_c26260 0.49 -0.2 2,734,357 + PGA1_c26260 0.50 +0.5 2,734,395 + PGA1_c26260 0.57 -0.7 2,734,442 - PGA1_c26260 0.66 +0.6 2,734,482 + PGA1_c26260 0.74 -0.2 2,734,483 + PGA1_c26260 0.74 +0.7 2,734,484 - PGA1_c26260 0.74 +0.9 2,734,490 + PGA1_c26260 0.75 +0.2 2,734,490 - PGA1_c26260 0.75 +0.4 2,734,544 - PGA1_c26260 0.86 -0.7 2,734,652 - +0.3 2,734,654 + +0.0 2,734,657 - -0.8 2,734,722 - -0.7 2,734,765 - +0.8 2,734,788 + -0.1 2,734,788 + +0.1 2,734,813 - +0.7 2,734,816 + +0.2 2,734,829 - -0.1 2,734,857 + PGA1_c26270 0.10 -0.9 2,734,865 - PGA1_c26270 0.11 +0.0 2,734,865 - PGA1_c26270 0.11 +0.3 2,734,865 - PGA1_c26270 0.11 +0.9 2,734,865 - PGA1_c26270 0.11 +1.0 2,734,865 - PGA1_c26270 0.11 -0.9 2,734,865 - PGA1_c26270 0.11 -1.8 2,734,869 - PGA1_c26270 0.11 +0.0 2,734,918 + PGA1_c26270 0.14 +0.2 2,734,958 + PGA1_c26270 0.17 -0.5 2,734,967 - PGA1_c26270 0.18 -0.5 2,734,998 - PGA1_c26270 0.20 -0.4 2,735,002 + PGA1_c26270 0.20 +1.0 2,735,046 - PGA1_c26270 0.23 -0.6
Or see this region's nucleotide sequence