Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2476 and HP15_2477 are separated by 244 nucleotides HP15_2477 and HP15_2478 are separated by 89 nucleotides HP15_2478 and HP15_2479 are separated by 241 nucleotides
HP15_2476: HP15_2476 - conserved hypothetical protein, at 2,616,812 to 2,617,084
_2476
HP15_2477: HP15_2477 - endonuclease I, at 2,617,329 to 2,617,907
_2477
HP15_2478: HP15_2478 - Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) , at 2,617,997 to 2,619,757
_2478
HP15_2479: HP15_2479 - acyl-CoA dehydrogenase family protein, at 2,619,999 to 2,621,870
_2479
Position (kb)
2617
2618
2619
2620 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2617.031 kb on - strand, within HP15_2476 at 2617.087 kb on + strand at 2617.095 kb on - strand at 2617.299 kb on + strand at 2617.307 kb on - strand at 2617.326 kb on - strand at 2617.382 kb on + strand at 2617.390 kb on - strand, within HP15_2477 at 2617.424 kb on + strand, within HP15_2477 at 2617.500 kb on + strand, within HP15_2477 at 2617.525 kb on + strand, within HP15_2477 at 2617.578 kb on + strand, within HP15_2477 at 2617.730 kb on + strand, within HP15_2477 at 2617.747 kb on + strand, within HP15_2477 at 2617.755 kb on - strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.788 kb on + strand, within HP15_2477 at 2617.798 kb on + strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.806 kb on - strand, within HP15_2477 at 2617.908 kb on - strand at 2618.013 kb on - strand at 2618.103 kb on + strand at 2618.103 kb on + strand at 2618.217 kb on - strand, within HP15_2478 at 2618.375 kb on + strand, within HP15_2478 at 2618.405 kb on - strand, within HP15_2478 at 2618.501 kb on + strand, within HP15_2478 at 2618.708 kb on - strand, within HP15_2478 at 2618.799 kb on - strand, within HP15_2478 at 2618.799 kb on - strand, within HP15_2478 at 2618.858 kb on + strand, within HP15_2478 at 2618.858 kb on + strand, within HP15_2478 at 2618.866 kb on - strand, within HP15_2478 at 2619.110 kb on + strand, within HP15_2478 at 2619.140 kb on + strand, within HP15_2478 at 2619.181 kb on + strand, within HP15_2478 at 2619.292 kb on + strand, within HP15_2478 at 2619.318 kb on + strand, within HP15_2478 at 2619.318 kb on + strand, within HP15_2478 at 2619.362 kb on - strand, within HP15_2478 at 2619.462 kb on + strand, within HP15_2478 at 2619.619 kb on - strand at 2619.641 kb on - strand at 2619.704 kb on - strand at 2619.864 kb on + strand at 2620.119 kb on - strand at 2620.119 kb on - strand at 2620.139 kb on + strand at 2620.164 kb on + strand at 2620.264 kb on - strand, within HP15_2479 at 2620.395 kb on + strand, within HP15_2479 at 2620.411 kb on + strand, within HP15_2479 at 2620.419 kb on - strand, within HP15_2479 at 2620.539 kb on + strand, within HP15_2479 at 2620.557 kb on - strand, within HP15_2479 at 2620.572 kb on - strand, within HP15_2479 at 2620.663 kb on - strand, within HP15_2479
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 2,617,031 - HP15_2476 0.80 +0.1 2,617,087 + +0.1 2,617,095 - +0.1 2,617,299 + +0.8 2,617,307 - +0.4 2,617,326 - +0.3 2,617,382 + -0.2 2,617,390 - HP15_2477 0.11 +0.2 2,617,424 + HP15_2477 0.16 +0.4 2,617,500 + HP15_2477 0.30 -0.4 2,617,525 + HP15_2477 0.34 +0.3 2,617,578 + HP15_2477 0.43 +0.3 2,617,730 + HP15_2477 0.69 -2.0 2,617,747 + HP15_2477 0.72 -0.4 2,617,755 - HP15_2477 0.74 +0.6 2,617,788 + HP15_2477 0.79 -0.1 2,617,788 + HP15_2477 0.79 -0.0 2,617,798 + HP15_2477 0.81 -0.2 2,617,806 - HP15_2477 0.82 -0.8 2,617,806 - HP15_2477 0.82 -0.1 2,617,908 - +0.9 2,618,013 - +1.6 2,618,103 + +1.0 2,618,103 + +0.4 2,618,217 - HP15_2478 0.12 +1.5 2,618,375 + HP15_2478 0.21 +0.7 2,618,405 - HP15_2478 0.23 +1.2 2,618,501 + HP15_2478 0.29 +0.7 2,618,708 - HP15_2478 0.40 +0.6 2,618,799 - HP15_2478 0.46 -0.2 2,618,799 - HP15_2478 0.46 +0.4 2,618,858 + HP15_2478 0.49 +1.6 2,618,858 + HP15_2478 0.49 +0.7 2,618,866 - HP15_2478 0.49 +1.3 2,619,110 + HP15_2478 0.63 +0.1 2,619,140 + HP15_2478 0.65 +1.1 2,619,181 + HP15_2478 0.67 +0.1 2,619,292 + HP15_2478 0.74 +1.0 2,619,318 + HP15_2478 0.75 +2.2 2,619,318 + HP15_2478 0.75 +0.5 2,619,362 - HP15_2478 0.78 +1.1 2,619,462 + HP15_2478 0.83 +0.6 2,619,619 - +1.6 2,619,641 - -0.5 2,619,704 - +1.1 2,619,864 + +1.1 2,620,119 - -0.0 2,620,119 - -2.5 2,620,139 + +1.0 2,620,164 + -0.7 2,620,264 - HP15_2479 0.14 +1.9 2,620,395 + HP15_2479 0.21 +0.1 2,620,411 + HP15_2479 0.22 +0.1 2,620,419 - HP15_2479 0.22 +0.9 2,620,539 + HP15_2479 0.29 +1.9 2,620,557 - HP15_2479 0.30 -0.7 2,620,572 - HP15_2479 0.31 -0.5 2,620,663 - HP15_2479 0.35 -0.4
Or see this region's nucleotide sequence