Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24390 and PGA1_c24400 overlap by 4 nucleotides PGA1_c24400 and PGA1_c24410 are separated by 96 nucleotides PGA1_c24410 and PGA1_c24420 are separated by 144 nucleotides PGA1_c24420 and PGA1_c24430 are separated by 44 nucleotides
PGA1_c24390: PGA1_c24390 - Uncharacterized protein conserved in bacteria, at 2,546,275 to 2,546,664
_c24390
PGA1_c24400: PGA1_c24400 - hypothetical protein, at 2,546,661 to 2,546,927
_c24400
PGA1_c24410: PGA1_c24410 - hypothetical protein, at 2,547,024 to 2,547,305
_c24410
PGA1_c24420: PGA1_c24420 - Uncharacterized conserved protein, at 2,547,450 to 2,547,788
_c24420
PGA1_c24430: PGA1_c24430 - peptidase M48-like protein, at 2,547,833 to 2,548,558
_c24430
Position (kb)
2547
2548 Strain fitness (log2 ratio)
-2
-1
0
1 at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.076 kb on + strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.084 kb on - strand at 2546.121 kb on + strand at 2546.129 kb on - strand at 2546.145 kb on - strand at 2546.156 kb on + strand at 2546.189 kb on + strand at 2546.189 kb on - strand at 2546.290 kb on + strand at 2546.314 kb on + strand, within PGA1_c24390 at 2546.314 kb on + strand, within PGA1_c24390 at 2546.336 kb on + strand, within PGA1_c24390 at 2546.344 kb on - strand, within PGA1_c24390 at 2546.390 kb on + strand, within PGA1_c24390 at 2546.429 kb on - strand, within PGA1_c24390 at 2546.432 kb on - strand, within PGA1_c24390 at 2546.484 kb on + strand, within PGA1_c24390 at 2546.582 kb on + strand, within PGA1_c24390 at 2546.662 kb on - strand at 2546.679 kb on - strand at 2546.684 kb on - strand at 2546.700 kb on + strand, within PGA1_c24400 at 2546.708 kb on - strand, within PGA1_c24400 at 2546.764 kb on + strand, within PGA1_c24400 at 2546.774 kb on + strand, within PGA1_c24400 at 2546.816 kb on - strand, within PGA1_c24400 at 2546.826 kb on + strand, within PGA1_c24400 at 2546.855 kb on + strand, within PGA1_c24400 at 2546.863 kb on - strand, within PGA1_c24400 at 2546.863 kb on - strand, within PGA1_c24400 at 2546.863 kb on - strand, within PGA1_c24400 at 2546.863 kb on - strand, within PGA1_c24400 at 2546.863 kb on - strand, within PGA1_c24400 at 2546.871 kb on - strand, within PGA1_c24400 at 2546.876 kb on - strand, within PGA1_c24400 at 2546.876 kb on - strand, within PGA1_c24400 at 2546.921 kb on - strand at 2546.946 kb on - strand at 2546.959 kb on + strand at 2547.018 kb on - strand at 2547.018 kb on - strand at 2547.018 kb on - strand at 2547.048 kb on + strand at 2547.056 kb on - strand, within PGA1_c24410 at 2547.056 kb on - strand, within PGA1_c24410 at 2547.091 kb on + strand, within PGA1_c24410 at 2547.215 kb on + strand, within PGA1_c24410 at 2547.215 kb on - strand, within PGA1_c24410 at 2547.249 kb on - strand, within PGA1_c24410 at 2547.280 kb on - strand at 2547.324 kb on + strand at 2547.351 kb on + strand at 2547.359 kb on - strand at 2547.457 kb on + strand at 2547.465 kb on - strand at 2547.467 kb on + strand at 2547.514 kb on + strand, within PGA1_c24420 at 2547.579 kb on - strand, within PGA1_c24420 at 2547.629 kb on + strand, within PGA1_c24420 at 2547.640 kb on + strand, within PGA1_c24420 at 2547.658 kb on + strand, within PGA1_c24420 at 2547.658 kb on + strand, within PGA1_c24420 at 2547.658 kb on + strand, within PGA1_c24420 at 2547.666 kb on - strand, within PGA1_c24420 at 2547.726 kb on - strand, within PGA1_c24420 at 2547.743 kb on - strand, within PGA1_c24420 at 2547.790 kb on + strand at 2547.808 kb on - strand at 2547.811 kb on + strand at 2547.817 kb on + strand at 2547.871 kb on + strand at 2547.887 kb on - strand at 2547.949 kb on + strand, within PGA1_c24430 at 2547.957 kb on - strand, within PGA1_c24430 at 2548.070 kb on + strand, within PGA1_c24430 at 2548.078 kb on - strand, within PGA1_c24430 at 2548.121 kb on + strand, within PGA1_c24430 at 2548.167 kb on + strand, within PGA1_c24430 at 2548.175 kb on - strand, within PGA1_c24430 at 2548.175 kb on - strand, within PGA1_c24430 at 2548.175 kb on - strand, within PGA1_c24430 at 2548.175 kb on - strand, within PGA1_c24430 at 2548.266 kb on - strand, within PGA1_c24430 at 2548.288 kb on - strand, within PGA1_c24430 at 2548.290 kb on + strand, within PGA1_c24430 at 2548.291 kb on - strand, within PGA1_c24430 at 2548.298 kb on - strand, within PGA1_c24430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,546,076 + -0.3 2,546,076 + +0.6 2,546,076 + -0.1 2,546,076 + +0.1 2,546,076 + -0.2 2,546,076 + -0.4 2,546,076 + +0.9 2,546,084 - +0.2 2,546,084 - +1.4 2,546,084 - -0.5 2,546,084 - -1.4 2,546,084 - -1.0 2,546,084 - +0.1 2,546,084 - +0.1 2,546,084 - +0.2 2,546,084 - +0.0 2,546,121 + -1.8 2,546,129 - -1.9 2,546,145 - +0.5 2,546,156 + +1.4 2,546,189 + +0.3 2,546,189 - -0.1 2,546,290 + -0.5 2,546,314 + PGA1_c24390 0.10 +1.5 2,546,314 + PGA1_c24390 0.10 -0.3 2,546,336 + PGA1_c24390 0.16 +0.8 2,546,344 - PGA1_c24390 0.18 -0.7 2,546,390 + PGA1_c24390 0.29 +0.4 2,546,429 - PGA1_c24390 0.39 -0.7 2,546,432 - PGA1_c24390 0.40 -0.8 2,546,484 + PGA1_c24390 0.54 -0.6 2,546,582 + PGA1_c24390 0.79 -0.6 2,546,662 - +0.1 2,546,679 - +0.4 2,546,684 - +0.7 2,546,700 + PGA1_c24400 0.15 +0.6 2,546,708 - PGA1_c24400 0.18 +0.7 2,546,764 + PGA1_c24400 0.39 +1.2 2,546,774 + PGA1_c24400 0.42 +1.4 2,546,816 - PGA1_c24400 0.58 -0.1 2,546,826 + PGA1_c24400 0.62 +0.3 2,546,855 + PGA1_c24400 0.73 -0.2 2,546,863 - PGA1_c24400 0.76 +0.2 2,546,863 - PGA1_c24400 0.76 +0.3 2,546,863 - PGA1_c24400 0.76 +0.6 2,546,863 - PGA1_c24400 0.76 +1.5 2,546,863 - PGA1_c24400 0.76 -0.6 2,546,871 - PGA1_c24400 0.79 -0.7 2,546,876 - PGA1_c24400 0.81 -0.0 2,546,876 - PGA1_c24400 0.81 +0.2 2,546,921 - +0.2 2,546,946 - -0.1 2,546,959 + -0.2 2,547,018 - -0.4 2,547,018 - -0.1 2,547,018 - -0.9 2,547,048 + +0.0 2,547,056 - PGA1_c24410 0.11 +1.5 2,547,056 - PGA1_c24410 0.11 +1.2 2,547,091 + PGA1_c24410 0.24 +0.9 2,547,215 + PGA1_c24410 0.68 -0.7 2,547,215 - PGA1_c24410 0.68 -0.4 2,547,249 - PGA1_c24410 0.80 +0.6 2,547,280 - -0.5 2,547,324 + -0.3 2,547,351 + -0.8 2,547,359 - +0.0 2,547,457 + +0.1 2,547,465 - +0.1 2,547,467 + -0.4 2,547,514 + PGA1_c24420 0.19 +0.6 2,547,579 - PGA1_c24420 0.38 -0.1 2,547,629 + PGA1_c24420 0.53 +0.5 2,547,640 + PGA1_c24420 0.56 +0.7 2,547,658 + PGA1_c24420 0.61 -0.5 2,547,658 + PGA1_c24420 0.61 +0.4 2,547,658 + PGA1_c24420 0.61 -0.5 2,547,666 - PGA1_c24420 0.64 -0.3 2,547,726 - PGA1_c24420 0.81 +0.1 2,547,743 - PGA1_c24420 0.86 +0.4 2,547,790 + +0.4 2,547,808 - -0.4 2,547,811 + -0.9 2,547,817 + -0.2 2,547,871 + +0.7 2,547,887 - +0.6 2,547,949 + PGA1_c24430 0.16 -0.2 2,547,957 - PGA1_c24430 0.17 +0.3 2,548,070 + PGA1_c24430 0.33 -0.6 2,548,078 - PGA1_c24430 0.34 +0.9 2,548,121 + PGA1_c24430 0.40 +0.8 2,548,167 + PGA1_c24430 0.46 -0.3 2,548,175 - PGA1_c24430 0.47 -2.0 2,548,175 - PGA1_c24430 0.47 -0.3 2,548,175 - PGA1_c24430 0.47 +0.6 2,548,175 - PGA1_c24430 0.47 +0.4 2,548,266 - PGA1_c24430 0.60 -0.6 2,548,288 - PGA1_c24430 0.63 -1.3 2,548,290 + PGA1_c24430 0.63 +0.5 2,548,291 - PGA1_c24430 0.63 +0.3 2,548,298 - PGA1_c24430 0.64 -0.9
Or see this region's nucleotide sequence