Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24230

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24220 and PGA1_c24230 are separated by 110 nucleotidesPGA1_c24230 and PGA1_c24240 are separated by 326 nucleotides PGA1_c24220: PGA1_c24220 - ornithine carbamoyltransferase ArgF, at 2,527,177 to 2,528,103 _c24220 PGA1_c24230: PGA1_c24230 - acetylornithine aminotransferase ArgD, at 2,528,214 to 2,529,398 _c24230 PGA1_c24240: PGA1_c24240 - putative S-adenosylmethionine uptake transporter, at 2,529,725 to 2,530,666 _c24240 Position (kb) 2528 2529 2530Strain fitness (log2 ratio) -1 0 1 2at 2527.400 kb on - strand, within PGA1_c24220at 2527.561 kb on - strand, within PGA1_c24220at 2527.662 kb on + strand, within PGA1_c24220at 2527.670 kb on - strand, within PGA1_c24220at 2527.845 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.008 kb on - strand, within PGA1_c24220at 2528.025 kb on + strandat 2528.043 kb on + strandat 2528.069 kb on - strandat 2528.224 kb on + strandat 2528.242 kb on - strandat 2528.250 kb on - strandat 2528.303 kb on - strandat 2528.409 kb on + strand, within PGA1_c24230at 2528.414 kb on + strand, within PGA1_c24230at 2528.414 kb on + strand, within PGA1_c24230at 2528.417 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.422 kb on - strand, within PGA1_c24230at 2528.427 kb on - strand, within PGA1_c24230at 2528.457 kb on + strand, within PGA1_c24230at 2528.553 kb on - strand, within PGA1_c24230at 2528.558 kb on - strand, within PGA1_c24230at 2528.560 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.570 kb on - strand, within PGA1_c24230at 2528.596 kb on - strand, within PGA1_c24230at 2528.609 kb on + strand, within PGA1_c24230at 2528.740 kb on + strand, within PGA1_c24230at 2528.793 kb on - strand, within PGA1_c24230at 2528.803 kb on + strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.902 kb on - strand, within PGA1_c24230at 2528.919 kb on + strand, within PGA1_c24230at 2528.984 kb on + strand, within PGA1_c24230at 2529.057 kb on - strand, within PGA1_c24230at 2529.137 kb on + strand, within PGA1_c24230at 2529.160 kb on - strand, within PGA1_c24230at 2529.217 kb on + strand, within PGA1_c24230at 2529.266 kb on - strand, within PGA1_c24230at 2529.286 kb on - strandat 2529.329 kb on + strandat 2529.354 kb on + strandat 2529.490 kb on + strandat 2529.490 kb on + strandat 2529.498 kb on - strandat 2529.498 kb on - strandat 2529.505 kb on + strandat 2529.559 kb on - strandat 2529.725 kb on + strandat 2529.725 kb on + strandat 2529.725 kb on + strandat 2529.725 kb on + strandat 2529.725 kb on + strandat 2529.725 kb on + strandat 2529.733 kb on - strandat 2529.733 kb on - strandat 2529.733 kb on - strandat 2529.733 kb on - strandat 2529.733 kb on - strandat 2529.733 kb on - strandat 2529.841 kb on + strand, within PGA1_c24240at 2529.874 kb on - strand, within PGA1_c24240at 2529.923 kb on - strand, within PGA1_c24240at 2529.926 kb on - strand, within PGA1_c24240at 2529.948 kb on - strand, within PGA1_c24240at 2529.973 kb on - strand, within PGA1_c24240at 2529.990 kb on + strand, within PGA1_c24240at 2530.001 kb on + strand, within PGA1_c24240at 2530.041 kb on + strand, within PGA1_c24240at 2530.044 kb on - strand, within PGA1_c24240at 2530.049 kb on - strand, within PGA1_c24240at 2530.224 kb on - strand, within PGA1_c24240at 2530.281 kb on - strand, within PGA1_c24240at 2530.292 kb on + strand, within PGA1_c24240at 2530.317 kb on - strand, within PGA1_c24240at 2530.322 kb on - strand, within PGA1_c24240at 2530.329 kb on + strand, within PGA1_c24240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,527,400 - PGA1_c24220 0.24 +1.1
2,527,561 - PGA1_c24220 0.41 +1.9
2,527,662 + PGA1_c24220 0.52 +1.7
2,527,670 - PGA1_c24220 0.53 +1.7
2,527,845 - PGA1_c24220 0.72 +1.9
2,528,008 - PGA1_c24220 0.90 +1.0
2,528,008 - PGA1_c24220 0.90 +1.6
2,528,025 + +1.9
2,528,043 + +1.8
2,528,069 - +1.6
2,528,224 + -0.3
2,528,242 - -0.3
2,528,250 - +1.3
2,528,303 - +1.3
2,528,409 + PGA1_c24230 0.16 +1.7
2,528,414 + PGA1_c24230 0.17 +2.0
2,528,414 + PGA1_c24230 0.17 +1.4
2,528,417 - PGA1_c24230 0.17 +1.9
2,528,422 - PGA1_c24230 0.18 +1.2
2,528,422 - PGA1_c24230 0.18 +0.9
2,528,422 - PGA1_c24230 0.18 +0.9
2,528,422 - PGA1_c24230 0.18 +0.3
2,528,427 - PGA1_c24230 0.18 -0.5
2,528,457 + PGA1_c24230 0.21 +0.7
2,528,553 - PGA1_c24230 0.29 +1.0
2,528,558 - PGA1_c24230 0.29 +0.7
2,528,560 - PGA1_c24230 0.29 +2.0
2,528,570 - PGA1_c24230 0.30 +1.2
2,528,570 - PGA1_c24230 0.30 +0.5
2,528,570 - PGA1_c24230 0.30 +1.5
2,528,570 - PGA1_c24230 0.30 +1.9
2,528,596 - PGA1_c24230 0.32 +0.9
2,528,609 + PGA1_c24230 0.33 +1.4
2,528,740 + PGA1_c24230 0.44 +1.1
2,528,793 - PGA1_c24230 0.49 +1.5
2,528,803 + PGA1_c24230 0.50 +1.7
2,528,902 - PGA1_c24230 0.58 +1.2
2,528,902 - PGA1_c24230 0.58 +0.4
2,528,902 - PGA1_c24230 0.58 +1.2
2,528,919 + PGA1_c24230 0.59 +1.4
2,528,984 + PGA1_c24230 0.65 +2.2
2,529,057 - PGA1_c24230 0.71 +0.9
2,529,137 + PGA1_c24230 0.78 +1.0
2,529,160 - PGA1_c24230 0.80 +1.6
2,529,217 + PGA1_c24230 0.85 +0.3
2,529,266 - PGA1_c24230 0.89 +0.6
2,529,286 - +1.1
2,529,329 + +0.9
2,529,354 + +1.5
2,529,490 + -0.3
2,529,490 + +0.5
2,529,498 - -1.2
2,529,498 - -0.3
2,529,505 + +0.8
2,529,559 - -1.3
2,529,725 + -0.9
2,529,725 + -0.8
2,529,725 + +1.5
2,529,725 + +0.2
2,529,725 + -0.7
2,529,725 + -0.1
2,529,733 - -0.2
2,529,733 - +0.7
2,529,733 - +0.2
2,529,733 - +0.1
2,529,733 - -1.4
2,529,733 - -1.7
2,529,841 + PGA1_c24240 0.12 +1.1
2,529,874 - PGA1_c24240 0.16 -1.0
2,529,923 - PGA1_c24240 0.21 -0.5
2,529,926 - PGA1_c24240 0.21 +0.5
2,529,948 - PGA1_c24240 0.24 +0.2
2,529,973 - PGA1_c24240 0.26 +0.5
2,529,990 + PGA1_c24240 0.28 +0.4
2,530,001 + PGA1_c24240 0.29 +0.3
2,530,041 + PGA1_c24240 0.34 -0.8
2,530,044 - PGA1_c24240 0.34 +0.3
2,530,049 - PGA1_c24240 0.34 -0.7
2,530,224 - PGA1_c24240 0.53 +0.7
2,530,281 - PGA1_c24240 0.59 +0.4
2,530,292 + PGA1_c24240 0.60 -0.5
2,530,317 - PGA1_c24240 0.63 +0.8
2,530,322 - PGA1_c24240 0.63 -0.0
2,530,329 + PGA1_c24240 0.64 +0.4

Or see this region's nucleotide sequence