Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23700 and PGA1_c23710 overlap by 1 nucleotides PGA1_c23710 and PGA1_c23720 are separated by 69 nucleotides
PGA1_c23700: PGA1_c23700 - protein HflC, at 2,473,362 to 2,474,252
_c23700
PGA1_c23710: PGA1_c23710 - putative protein HflK, at 2,474,252 to 2,475,406
_c23710
PGA1_c23720: PGA1_c23720 - glutathione reductase Gor, at 2,475,476 to 2,476,831
_c23720
Position (kb)
2474
2475
2476 Strain fitness (log2 ratio)
-1
0
1 at 2473.265 kb on + strand at 2473.280 kb on - strand at 2473.304 kb on - strand at 2473.304 kb on - strand at 2473.310 kb on - strand at 2473.317 kb on - strand at 2473.368 kb on - strand at 2473.439 kb on + strand at 2473.449 kb on + strand at 2473.575 kb on - strand, within PGA1_c23700 at 2473.690 kb on + strand, within PGA1_c23700 at 2473.922 kb on - strand, within PGA1_c23700 at 2474.091 kb on - strand, within PGA1_c23700 at 2474.208 kb on - strand at 2474.212 kb on + strand at 2474.232 kb on + strand at 2474.271 kb on - strand at 2474.311 kb on - strand at 2474.351 kb on + strand at 2474.473 kb on - strand, within PGA1_c23710 at 2474.484 kb on - strand, within PGA1_c23710 at 2474.912 kb on - strand, within PGA1_c23710 at 2474.917 kb on + strand, within PGA1_c23710 at 2474.965 kb on + strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710 at 2474.973 kb on - strand, within PGA1_c23710 at 2475.263 kb on - strand, within PGA1_c23710 at 2475.343 kb on - strand at 2475.447 kb on + strand at 2475.455 kb on - strand at 2475.495 kb on - strand at 2475.498 kb on - strand at 2475.512 kb on - strand at 2475.514 kb on + strand at 2475.726 kb on - strand, within PGA1_c23720 at 2475.949 kb on - strand, within PGA1_c23720 at 2476.015 kb on + strand, within PGA1_c23720 at 2476.261 kb on + strand, within PGA1_c23720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,473,265 + -0.2 2,473,280 - -0.5 2,473,304 - -0.2 2,473,304 - -0.2 2,473,310 - +0.3 2,473,317 - +0.8 2,473,368 - +0.5 2,473,439 + +0.4 2,473,449 + +0.3 2,473,575 - PGA1_c23700 0.24 +0.2 2,473,690 + PGA1_c23700 0.37 -0.5 2,473,922 - PGA1_c23700 0.63 +0.2 2,474,091 - PGA1_c23700 0.82 +0.1 2,474,208 - +0.4 2,474,212 + -0.4 2,474,232 + -0.3 2,474,271 - -0.5 2,474,311 - -0.6 2,474,351 + +0.5 2,474,473 - PGA1_c23710 0.19 -0.3 2,474,484 - PGA1_c23710 0.20 +1.1 2,474,912 - PGA1_c23710 0.57 -0.2 2,474,917 + PGA1_c23710 0.58 +0.4 2,474,965 + PGA1_c23710 0.62 -0.1 2,474,973 - PGA1_c23710 0.62 +0.1 2,474,973 - PGA1_c23710 0.62 +1.1 2,474,973 - PGA1_c23710 0.62 +0.9 2,475,263 - PGA1_c23710 0.88 +0.6 2,475,343 - -1.1 2,475,447 + +0.0 2,475,455 - -0.5 2,475,495 - -0.2 2,475,498 - +0.1 2,475,512 - -0.1 2,475,514 + +0.5 2,475,726 - PGA1_c23720 0.18 -1.7 2,475,949 - PGA1_c23720 0.35 -1.0 2,476,015 + PGA1_c23720 0.40 +0.7 2,476,261 + PGA1_c23720 0.58 +0.4
Or see this region's nucleotide sequence