Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23690

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23680 and PGA1_c23690 are separated by 557 nucleotidesPGA1_c23690 and PGA1_c23700 are separated by 269 nucleotides PGA1_c23680: PGA1_c23680 - putative transcriptional regulator, crp family, at 2,470,259 to 2,471,020 _c23680 PGA1_c23690: PGA1_c23690 - protease do, at 2,471,578 to 2,473,092 _c23690 PGA1_c23700: PGA1_c23700 - protein HflC, at 2,473,362 to 2,474,252 _c23700 Position (kb) 2471 2472 2473 2474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2470.780 kb on - strand, within PGA1_c23680at 2470.994 kb on - strandat 2471.108 kb on - strandat 2471.110 kb on + strandat 2471.110 kb on + strandat 2471.110 kb on + strandat 2471.118 kb on - strandat 2471.118 kb on - strandat 2471.118 kb on - strandat 2471.132 kb on - strandat 2471.425 kb on + strandat 2471.425 kb on + strandat 2471.425 kb on + strandat 2471.500 kb on + strandat 2471.524 kb on + strandat 2471.616 kb on - strandat 2471.618 kb on - strandat 2471.657 kb on + strandat 2471.725 kb on + strandat 2471.738 kb on - strand, within PGA1_c23690at 2471.827 kb on + strand, within PGA1_c23690at 2471.832 kb on + strand, within PGA1_c23690at 2471.903 kb on + strand, within PGA1_c23690at 2471.918 kb on + strand, within PGA1_c23690at 2472.010 kb on - strand, within PGA1_c23690at 2472.039 kb on + strand, within PGA1_c23690at 2472.039 kb on + strand, within PGA1_c23690at 2472.047 kb on - strand, within PGA1_c23690at 2472.065 kb on - strand, within PGA1_c23690at 2472.073 kb on + strand, within PGA1_c23690at 2472.164 kb on + strand, within PGA1_c23690at 2472.207 kb on + strand, within PGA1_c23690at 2472.207 kb on + strand, within PGA1_c23690at 2472.207 kb on + strand, within PGA1_c23690at 2472.215 kb on - strand, within PGA1_c23690at 2472.258 kb on - strand, within PGA1_c23690at 2472.308 kb on + strand, within PGA1_c23690at 2472.427 kb on + strand, within PGA1_c23690at 2472.478 kb on + strand, within PGA1_c23690at 2472.578 kb on + strand, within PGA1_c23690at 2472.621 kb on - strand, within PGA1_c23690at 2472.786 kb on - strand, within PGA1_c23690at 2472.798 kb on + strand, within PGA1_c23690at 2472.827 kb on + strand, within PGA1_c23690at 2472.900 kb on - strand, within PGA1_c23690at 2473.087 kb on - strandat 2473.110 kb on - strandat 2473.110 kb on - strandat 2473.147 kb on + strandat 2473.180 kb on - strandat 2473.210 kb on + strandat 2473.216 kb on + strandat 2473.246 kb on + strandat 2473.265 kb on + strandat 2473.280 kb on - strandat 2473.304 kb on - strandat 2473.304 kb on - strandat 2473.310 kb on - strandat 2473.317 kb on - strandat 2473.368 kb on - strandat 2473.439 kb on + strandat 2473.449 kb on + strandat 2473.575 kb on - strand, within PGA1_c23700at 2473.690 kb on + strand, within PGA1_c23700at 2473.922 kb on - strand, within PGA1_c23700at 2474.091 kb on - strand, within PGA1_c23700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,470,780 - PGA1_c23680 0.68 -0.6
2,470,994 - -0.1
2,471,108 - +0.1
2,471,110 + -0.6
2,471,110 + +0.1
2,471,110 + -4.1
2,471,118 - -1.0
2,471,118 - -0.4
2,471,118 - -1.3
2,471,132 - +0.5
2,471,425 + -0.4
2,471,425 + -0.8
2,471,425 + +0.9
2,471,500 + +0.3
2,471,524 + -0.9
2,471,616 - -0.3
2,471,618 - -0.8
2,471,657 + +0.2
2,471,725 + -1.0
2,471,738 - PGA1_c23690 0.11 +0.2
2,471,827 + PGA1_c23690 0.16 -1.4
2,471,832 + PGA1_c23690 0.17 +0.7
2,471,903 + PGA1_c23690 0.21 +0.3
2,471,918 + PGA1_c23690 0.22 +0.5
2,472,010 - PGA1_c23690 0.29 +0.1
2,472,039 + PGA1_c23690 0.30 -0.3
2,472,039 + PGA1_c23690 0.30 +0.7
2,472,047 - PGA1_c23690 0.31 +0.1
2,472,065 - PGA1_c23690 0.32 +0.6
2,472,073 + PGA1_c23690 0.33 -0.3
2,472,164 + PGA1_c23690 0.39 +0.9
2,472,207 + PGA1_c23690 0.42 -0.3
2,472,207 + PGA1_c23690 0.42 +0.2
2,472,207 + PGA1_c23690 0.42 +0.9
2,472,215 - PGA1_c23690 0.42 +0.9
2,472,258 - PGA1_c23690 0.45 +1.0
2,472,308 + PGA1_c23690 0.48 +0.5
2,472,427 + PGA1_c23690 0.56 -0.2
2,472,478 + PGA1_c23690 0.59 +0.9
2,472,578 + PGA1_c23690 0.66 +1.5
2,472,621 - PGA1_c23690 0.69 +0.1
2,472,786 - PGA1_c23690 0.80 +0.3
2,472,798 + PGA1_c23690 0.81 -1.6
2,472,827 + PGA1_c23690 0.82 +1.1
2,472,900 - PGA1_c23690 0.87 +0.9
2,473,087 - -0.1
2,473,110 - -0.1
2,473,110 - -0.6
2,473,147 + -0.4
2,473,180 - +0.3
2,473,210 + +0.7
2,473,216 + -1.2
2,473,246 + -0.1
2,473,265 + -0.2
2,473,280 - -0.5
2,473,304 - -0.2
2,473,304 - -0.2
2,473,310 - +0.3
2,473,317 - +0.8
2,473,368 - +0.5
2,473,439 + +0.4
2,473,449 + +0.3
2,473,575 - PGA1_c23700 0.24 +0.2
2,473,690 + PGA1_c23700 0.37 -0.5
2,473,922 - PGA1_c23700 0.63 +0.2
2,474,091 - PGA1_c23700 0.82 +0.1

Or see this region's nucleotide sequence