Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23360 and PGA1_c23370 are separated by 148 nucleotides PGA1_c23370 and PGA1_c23380 are separated by 537 nucleotides
PGA1_c23360: PGA1_c23360 - putative iron containing alcohol dehydrogenase, at 2,427,171 to 2,428,316
_c23360
PGA1_c23370: PGA1_c23370 - hypothetical protein, at 2,428,465 to 2,428,605
_c23370
PGA1_c23380: PGA1_c23380 - choline/ethanolamine kinase-like protein, at 2,429,143 to 2,430,069
_c23380
Position (kb)
2428
2429 Strain fitness (log2 ratio)
-2
-1
0
1 at 2428.284 kb on + strand at 2428.285 kb on + strand at 2428.310 kb on + strand at 2428.317 kb on - strand at 2428.317 kb on - strand at 2428.339 kb on + strand at 2428.342 kb on - strand at 2428.352 kb on - strand at 2428.376 kb on + strand at 2428.384 kb on - strand at 2428.427 kb on + strand at 2428.438 kb on - strand at 2428.458 kb on + strand at 2428.534 kb on + strand, within PGA1_c23370 at 2428.547 kb on - strand, within PGA1_c23370 at 2428.555 kb on + strand, within PGA1_c23370 at 2428.555 kb on + strand, within PGA1_c23370 at 2428.561 kb on + strand, within PGA1_c23370 at 2428.563 kb on - strand, within PGA1_c23370 at 2428.564 kb on - strand, within PGA1_c23370 at 2428.630 kb on - strand at 2428.657 kb on - strand at 2428.681 kb on + strand at 2428.689 kb on - strand at 2428.717 kb on + strand at 2428.717 kb on + strand at 2428.717 kb on + strand at 2428.717 kb on + strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.725 kb on - strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.752 kb on + strand at 2428.757 kb on + strand at 2428.757 kb on + strand at 2428.757 kb on + strand at 2428.757 kb on + strand at 2428.757 kb on + strand at 2428.757 kb on + strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.760 kb on - strand at 2428.762 kb on + strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.765 kb on - strand at 2428.775 kb on - strand at 2428.794 kb on + strand at 2428.798 kb on + strand at 2428.827 kb on - strand at 2428.828 kb on - strand at 2428.865 kb on + strand at 2428.933 kb on + strand at 2428.943 kb on + strand at 2428.951 kb on - strand at 2428.984 kb on - strand at 2428.987 kb on + strand at 2428.987 kb on - strand at 2429.017 kb on + strand at 2429.033 kb on - strand at 2429.084 kb on + strand at 2429.086 kb on - strand at 2429.091 kb on + strand at 2429.099 kb on - strand at 2429.101 kb on - strand at 2429.119 kb on - strand at 2429.143 kb on - strand at 2429.191 kb on + strand at 2429.199 kb on - strand at 2429.199 kb on - strand at 2429.199 kb on - strand at 2429.206 kb on - strand at 2429.285 kb on + strand, within PGA1_c23380 at 2429.334 kb on + strand, within PGA1_c23380 at 2429.334 kb on + strand, within PGA1_c23380 at 2429.342 kb on - strand, within PGA1_c23380 at 2429.388 kb on - strand, within PGA1_c23380 at 2429.390 kb on + strand, within PGA1_c23380 at 2429.398 kb on - strand, within PGA1_c23380 at 2429.411 kb on - strand, within PGA1_c23380 at 2429.476 kb on - strand, within PGA1_c23380 at 2429.546 kb on + strand, within PGA1_c23380 at 2429.548 kb on - strand, within PGA1_c23380 at 2429.586 kb on + strand, within PGA1_c23380 at 2429.597 kb on + strand, within PGA1_c23380 at 2429.605 kb on - strand, within PGA1_c23380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,428,284 + -0.1 2,428,285 + -0.8 2,428,310 + -0.4 2,428,317 - -0.4 2,428,317 - +0.8 2,428,339 + -0.0 2,428,342 - -0.7 2,428,352 - -0.3 2,428,376 + +0.1 2,428,384 - -1.0 2,428,427 + -0.5 2,428,438 - +0.8 2,428,458 + +0.2 2,428,534 + PGA1_c23370 0.49 -0.2 2,428,547 - PGA1_c23370 0.58 +0.6 2,428,555 + PGA1_c23370 0.64 +0.9 2,428,555 + PGA1_c23370 0.64 +0.4 2,428,561 + PGA1_c23370 0.68 -0.1 2,428,563 - PGA1_c23370 0.70 +0.1 2,428,564 - PGA1_c23370 0.70 +0.6 2,428,630 - +0.7 2,428,657 - +0.2 2,428,681 + +0.3 2,428,689 - +0.4 2,428,717 + +0.4 2,428,717 + +0.6 2,428,717 + +0.4 2,428,717 + -1.1 2,428,725 - -0.2 2,428,725 - -1.1 2,428,725 - -0.5 2,428,725 - -0.8 2,428,725 - +0.6 2,428,725 - -0.2 2,428,725 - +1.0 2,428,752 + -0.9 2,428,752 + +0.4 2,428,752 + -0.2 2,428,752 + -0.9 2,428,752 + +0.6 2,428,752 + -0.6 2,428,752 + +1.1 2,428,752 + -0.2 2,428,752 + +0.5 2,428,752 + +1.4 2,428,752 + -1.3 2,428,752 + -1.3 2,428,752 + +0.0 2,428,752 + -1.2 2,428,757 + +0.5 2,428,757 + -0.2 2,428,757 + +0.4 2,428,757 + -0.3 2,428,757 + +0.2 2,428,757 + -1.9 2,428,760 - -0.4 2,428,760 - -0.0 2,428,760 - -0.1 2,428,760 - +0.9 2,428,760 - +0.5 2,428,760 - -0.8 2,428,760 - +0.8 2,428,760 - -0.9 2,428,760 - -0.3 2,428,762 + -0.5 2,428,765 - +0.2 2,428,765 - +0.3 2,428,765 - +0.7 2,428,765 - -0.0 2,428,765 - -0.2 2,428,765 - +0.6 2,428,765 - -0.2 2,428,775 - +0.7 2,428,794 + +0.7 2,428,798 + +0.3 2,428,827 - +0.6 2,428,828 - -0.1 2,428,865 + +0.7 2,428,933 + +0.4 2,428,943 + +0.0 2,428,951 - -1.2 2,428,984 - +0.2 2,428,987 + -1.3 2,428,987 - +0.2 2,429,017 + -0.5 2,429,033 - +0.3 2,429,084 + +0.2 2,429,086 - -0.1 2,429,091 + +0.7 2,429,099 - -0.9 2,429,101 - -0.4 2,429,119 - -1.3 2,429,143 - -0.6 2,429,191 + +1.2 2,429,199 - +0.1 2,429,199 - +0.2 2,429,199 - +1.0 2,429,206 - +0.5 2,429,285 + PGA1_c23380 0.15 -0.8 2,429,334 + PGA1_c23380 0.21 +0.2 2,429,334 + PGA1_c23380 0.21 -0.4 2,429,342 - PGA1_c23380 0.21 +0.5 2,429,388 - PGA1_c23380 0.26 +1.4 2,429,390 + PGA1_c23380 0.27 +1.0 2,429,398 - PGA1_c23380 0.28 -0.4 2,429,411 - PGA1_c23380 0.29 +0.3 2,429,476 - PGA1_c23380 0.36 -0.5 2,429,546 + PGA1_c23380 0.43 -0.8 2,429,548 - PGA1_c23380 0.44 -0.1 2,429,586 + PGA1_c23380 0.48 -0.0 2,429,597 + PGA1_c23380 0.49 +0.3 2,429,605 - PGA1_c23380 0.50 +0.2
Or see this region's nucleotide sequence