Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23320 and PGA1_c23330 are separated by 79 nucleotides PGA1_c23330 and PGA1_c23340 overlap by 4 nucleotides PGA1_c23340 and PGA1_c23350 are separated by 82 nucleotides
PGA1_c23320: PGA1_c23320 - inositol monophosphatase-like protein, at 2,422,622 to 2,423,422
_c23320
PGA1_c23330: PGA1_c23330 - putative N-formylglutamate amidohydrolase, at 2,423,502 to 2,424,254
_c23330
PGA1_c23340: PGA1_c23340 - putative glutamine synthetase, at 2,424,251 to 2,425,612
_c23340
PGA1_c23350: PGA1_c23350 - succinate-semialdehyde dehdyrogenase GabD, at 2,425,695 to 2,427,077
_c23350
Position (kb)
2424
2425
2426 Strain fitness (log2 ratio)
-1
0
1 at 2423.264 kb on + strand, within PGA1_c23320 at 2423.283 kb on + strand, within PGA1_c23320 at 2423.366 kb on - strand at 2423.424 kb on - strand at 2423.439 kb on + strand at 2423.447 kb on - strand at 2423.479 kb on - strand at 2423.515 kb on + strand at 2423.603 kb on + strand, within PGA1_c23330 at 2423.653 kb on - strand, within PGA1_c23330 at 2423.784 kb on - strand, within PGA1_c23330 at 2423.784 kb on - strand, within PGA1_c23330 at 2423.803 kb on + strand, within PGA1_c23330 at 2423.890 kb on + strand, within PGA1_c23330 at 2423.913 kb on - strand, within PGA1_c23330 at 2423.913 kb on - strand, within PGA1_c23330 at 2423.913 kb on - strand, within PGA1_c23330 at 2423.915 kb on - strand, within PGA1_c23330 at 2423.959 kb on - strand, within PGA1_c23330 at 2423.982 kb on + strand, within PGA1_c23330 at 2424.012 kb on - strand, within PGA1_c23330 at 2424.067 kb on + strand, within PGA1_c23330 at 2424.075 kb on - strand, within PGA1_c23330 at 2424.075 kb on - strand, within PGA1_c23330 at 2424.075 kb on - strand, within PGA1_c23330 at 2424.093 kb on - strand, within PGA1_c23330 at 2424.116 kb on - strand, within PGA1_c23330 at 2424.141 kb on - strand, within PGA1_c23330 at 2424.141 kb on - strand, within PGA1_c23330 at 2424.153 kb on - strand, within PGA1_c23330 at 2424.158 kb on - strand, within PGA1_c23330 at 2424.225 kb on + strand at 2424.225 kb on + strand at 2424.233 kb on - strand at 2424.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,423,264 + PGA1_c23320 0.80 -1.6 2,423,283 + PGA1_c23320 0.83 -0.6 2,423,366 - -0.0 2,423,424 - +0.6 2,423,439 + +0.3 2,423,447 - +0.2 2,423,479 - +1.2 2,423,515 + -0.3 2,423,603 + PGA1_c23330 0.13 +0.1 2,423,653 - PGA1_c23330 0.20 -0.2 2,423,784 - PGA1_c23330 0.37 +0.1 2,423,784 - PGA1_c23330 0.37 -1.3 2,423,803 + PGA1_c23330 0.40 -0.1 2,423,890 + PGA1_c23330 0.52 +0.1 2,423,913 - PGA1_c23330 0.55 +0.1 2,423,913 - PGA1_c23330 0.55 +0.7 2,423,913 - PGA1_c23330 0.55 +0.1 2,423,915 - PGA1_c23330 0.55 -0.3 2,423,959 - PGA1_c23330 0.61 +1.6 2,423,982 + PGA1_c23330 0.64 +0.3 2,424,012 - PGA1_c23330 0.68 -0.1 2,424,067 + PGA1_c23330 0.75 -0.2 2,424,075 - PGA1_c23330 0.76 +0.6 2,424,075 - PGA1_c23330 0.76 +1.2 2,424,075 - PGA1_c23330 0.76 -0.6 2,424,093 - PGA1_c23330 0.78 +1.3 2,424,116 - PGA1_c23330 0.82 -0.2 2,424,141 - PGA1_c23330 0.85 +0.1 2,424,141 - PGA1_c23330 0.85 -0.1 2,424,153 - PGA1_c23330 0.86 +0.3 2,424,158 - PGA1_c23330 0.87 -0.1 2,424,225 + +0.1 2,424,225 + +0.9 2,424,233 - +1.0 2,424,233 - +0.1
Or see this region's nucleotide sequence