Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23340

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23320 and PGA1_c23330 are separated by 79 nucleotidesPGA1_c23330 and PGA1_c23340 overlap by 4 nucleotidesPGA1_c23340 and PGA1_c23350 are separated by 82 nucleotides PGA1_c23320: PGA1_c23320 - inositol monophosphatase-like protein, at 2,422,622 to 2,423,422 _c23320 PGA1_c23330: PGA1_c23330 - putative N-formylglutamate amidohydrolase, at 2,423,502 to 2,424,254 _c23330 PGA1_c23340: PGA1_c23340 - putative glutamine synthetase, at 2,424,251 to 2,425,612 _c23340 PGA1_c23350: PGA1_c23350 - succinate-semialdehyde dehdyrogenase GabD, at 2,425,695 to 2,427,077 _c23350 Position (kb) 2424 2425 2426Strain fitness (log2 ratio) -1 0 1at 2423.264 kb on + strand, within PGA1_c23320at 2423.283 kb on + strand, within PGA1_c23320at 2423.366 kb on - strandat 2423.424 kb on - strandat 2423.439 kb on + strandat 2423.447 kb on - strandat 2423.479 kb on - strandat 2423.515 kb on + strandat 2423.603 kb on + strand, within PGA1_c23330at 2423.653 kb on - strand, within PGA1_c23330at 2423.784 kb on - strand, within PGA1_c23330at 2423.784 kb on - strand, within PGA1_c23330at 2423.803 kb on + strand, within PGA1_c23330at 2423.890 kb on + strand, within PGA1_c23330at 2423.913 kb on - strand, within PGA1_c23330at 2423.913 kb on - strand, within PGA1_c23330at 2423.913 kb on - strand, within PGA1_c23330at 2423.915 kb on - strand, within PGA1_c23330at 2423.959 kb on - strand, within PGA1_c23330at 2423.982 kb on + strand, within PGA1_c23330at 2424.012 kb on - strand, within PGA1_c23330at 2424.067 kb on + strand, within PGA1_c23330at 2424.075 kb on - strand, within PGA1_c23330at 2424.075 kb on - strand, within PGA1_c23330at 2424.075 kb on - strand, within PGA1_c23330at 2424.093 kb on - strand, within PGA1_c23330at 2424.116 kb on - strand, within PGA1_c23330at 2424.141 kb on - strand, within PGA1_c23330at 2424.141 kb on - strand, within PGA1_c23330at 2424.153 kb on - strand, within PGA1_c23330at 2424.158 kb on - strand, within PGA1_c23330at 2424.225 kb on + strandat 2424.225 kb on + strandat 2424.233 kb on - strandat 2424.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,423,264 + PGA1_c23320 0.80 -1.6
2,423,283 + PGA1_c23320 0.83 -0.6
2,423,366 - -0.0
2,423,424 - +0.6
2,423,439 + +0.3
2,423,447 - +0.2
2,423,479 - +1.2
2,423,515 + -0.3
2,423,603 + PGA1_c23330 0.13 +0.1
2,423,653 - PGA1_c23330 0.20 -0.2
2,423,784 - PGA1_c23330 0.37 +0.1
2,423,784 - PGA1_c23330 0.37 -1.3
2,423,803 + PGA1_c23330 0.40 -0.1
2,423,890 + PGA1_c23330 0.52 +0.1
2,423,913 - PGA1_c23330 0.55 +0.1
2,423,913 - PGA1_c23330 0.55 +0.7
2,423,913 - PGA1_c23330 0.55 +0.1
2,423,915 - PGA1_c23330 0.55 -0.3
2,423,959 - PGA1_c23330 0.61 +1.6
2,423,982 + PGA1_c23330 0.64 +0.3
2,424,012 - PGA1_c23330 0.68 -0.1
2,424,067 + PGA1_c23330 0.75 -0.2
2,424,075 - PGA1_c23330 0.76 +0.6
2,424,075 - PGA1_c23330 0.76 +1.2
2,424,075 - PGA1_c23330 0.76 -0.6
2,424,093 - PGA1_c23330 0.78 +1.3
2,424,116 - PGA1_c23330 0.82 -0.2
2,424,141 - PGA1_c23330 0.85 +0.1
2,424,141 - PGA1_c23330 0.85 -0.1
2,424,153 - PGA1_c23330 0.86 +0.3
2,424,158 - PGA1_c23330 0.87 -0.1
2,424,225 + +0.1
2,424,225 + +0.9
2,424,233 - +1.0
2,424,233 - +0.1

Or see this region's nucleotide sequence