Strain Fitness in Marinobacter adhaerens HP15 around HP15_2181

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2180 and HP15_2181 are separated by 112 nucleotidesHP15_2181 and HP15_2182 are separated by 156 nucleotidesHP15_2182 and HP15_2183 are separated by 238 nucleotides HP15_2180: HP15_2180 - transcriptional regulator, RpiR family protein, at 2,291,896 to 2,292,789 _2180 HP15_2181: HP15_2181 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,292,902 to 2,294,746 _2181 HP15_2182: HP15_2182 - histone-like bacterial DNA-binding protein, at 2,294,903 to 2,295,175 _2182 HP15_2183: HP15_2183 - DNA-binding ATP-dependent protease La, at 2,295,414 to 2,297,831 _2183 Position (kb) 2292 2293 2294 2295Strain fitness (log2 ratio) -2 -1 0 1at 2292.186 kb on - strand, within HP15_2180at 2292.261 kb on + strand, within HP15_2180at 2292.417 kb on + strand, within HP15_2180at 2292.439 kb on - strand, within HP15_2180at 2292.540 kb on + strand, within HP15_2180at 2292.548 kb on - strand, within HP15_2180at 2292.558 kb on + strand, within HP15_2180at 2292.691 kb on + strand, within HP15_2180at 2292.737 kb on + strandat 2292.759 kb on + strandat 2292.766 kb on - strandat 2292.802 kb on + strandat 2292.807 kb on + strandat 2292.869 kb on + strandat 2293.003 kb on + strandat 2293.025 kb on - strandat 2293.150 kb on + strand, within HP15_2181at 2293.208 kb on + strand, within HP15_2181at 2293.208 kb on + strand, within HP15_2181at 2293.216 kb on - strand, within HP15_2181at 2293.216 kb on - strand, within HP15_2181at 2293.216 kb on - strand, within HP15_2181at 2293.395 kb on + strand, within HP15_2181at 2293.504 kb on + strand, within HP15_2181at 2293.788 kb on + strand, within HP15_2181at 2293.952 kb on - strand, within HP15_2181at 2293.997 kb on - strand, within HP15_2181at 2294.285 kb on + strand, within HP15_2181at 2294.613 kb on + strandat 2294.628 kb on - strandat 2294.722 kb on - strandat 2294.764 kb on + strandat 2294.764 kb on + strandat 2294.779 kb on + strandat 2294.819 kb on - strandat 2295.519 kb on - strandat 2295.524 kb on - strandat 2295.536 kb on - strandat 2295.654 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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2,292,186 - HP15_2180 0.32 -0.5
2,292,261 + HP15_2180 0.41 +0.3
2,292,417 + HP15_2180 0.58 -0.2
2,292,439 - HP15_2180 0.61 +0.1
2,292,540 + HP15_2180 0.72 +0.1
2,292,548 - HP15_2180 0.73 -0.3
2,292,558 + HP15_2180 0.74 +0.6
2,292,691 + HP15_2180 0.89 +1.2
2,292,737 + +0.8
2,292,759 + -0.5
2,292,766 - +0.1
2,292,802 + +0.4
2,292,807 + +0.5
2,292,869 + +0.4
2,293,003 + -0.9
2,293,025 - -1.5
2,293,150 + HP15_2181 0.13 -1.3
2,293,208 + HP15_2181 0.17 -1.4
2,293,208 + HP15_2181 0.17 -2.0
2,293,216 - HP15_2181 0.17 -0.4
2,293,216 - HP15_2181 0.17 +0.1
2,293,216 - HP15_2181 0.17 -1.3
2,293,395 + HP15_2181 0.27 -1.9
2,293,504 + HP15_2181 0.33 -1.0
2,293,788 + HP15_2181 0.48 -2.1
2,293,952 - HP15_2181 0.57 -1.7
2,293,997 - HP15_2181 0.59 +0.1
2,294,285 + HP15_2181 0.75 -1.9
2,294,613 + -0.5
2,294,628 - +0.4
2,294,722 - -0.7
2,294,764 + -1.6
2,294,764 + -1.8
2,294,779 + -0.5
2,294,819 - -0.2
2,295,519 - +0.1
2,295,524 - -0.1
2,295,536 - +1.0
2,295,654 - -0.1

Or see this region's nucleotide sequence