Strain Fitness in Marinobacter adhaerens HP15 around HP15_2087

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2086 and HP15_2087 overlap by 4 nucleotidesHP15_2087 and HP15_2088 are separated by 87 nucleotides HP15_2086: HP15_2086 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 2,183,807 to 2,184,994 _2086 HP15_2087: HP15_2087 - protein belonging to uncharacterized protein family UPF0274, at 2,184,991 to 2,185,635 _2087 HP15_2088: HP15_2088 - adenylosuccinate lyase, at 2,185,723 to 2,187,090 _2088 Position (kb) 2184 2185 2186Strain fitness (log2 ratio) -2 -1 0 1at 2184.947 kb on + strandat 2184.955 kb on - strandat 2185.150 kb on - strand, within HP15_2087at 2185.187 kb on + strand, within HP15_2087at 2185.197 kb on + strand, within HP15_2087at 2185.253 kb on + strand, within HP15_2087at 2185.259 kb on + strand, within HP15_2087at 2185.261 kb on - strand, within HP15_2087at 2185.397 kb on - strand, within HP15_2087at 2185.450 kb on - strand, within HP15_2087at 2185.524 kb on + strand, within HP15_2087

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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2,184,947 + -0.4
2,184,955 - -0.9
2,185,150 - HP15_2087 0.25 -2.6
2,185,187 + HP15_2087 0.30 -0.5
2,185,197 + HP15_2087 0.32 -0.5
2,185,253 + HP15_2087 0.41 -2.5
2,185,259 + HP15_2087 0.42 -0.7
2,185,261 - HP15_2087 0.42 -0.3
2,185,397 - HP15_2087 0.63 -0.3
2,185,450 - HP15_2087 0.71 -0.9
2,185,524 + HP15_2087 0.83 -0.8

Or see this region's nucleotide sequence