Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c20990 and PGA1_c21000 are separated by 233 nucleotides PGA1_c21000 and PGA1_c21010 are separated by 68 nucleotides PGA1_c21010 and PGA1_c21020 overlap by 4 nucleotides
PGA1_c20990: PGA1_c20990 - threonyl-tRNA synthetase ThrS, at 2,177,374 to 2,179,320
_c20990
PGA1_c21000: PGA1_c21000 - Predicted integral membrane protein (DUF2282)., at 2,179,554 to 2,179,859
_c21000
PGA1_c21010: PGA1_c21010 - component of stress sensing system, with PGA1_c21020 (DUF2063) (from data) , at 2,179,928 to 2,180,776
_c21010
PGA1_c21020: PGA1_c21020 - component of stress sensing system with PGA1_c21010 (DUF692) (from data) , at 2,180,773 to 2,181,528
_c21020
Position (kb)
2179
2180 Strain fitness (log2 ratio)
-1
0
1 at 2179.295 kb on + strand at 2179.360 kb on + strand at 2179.368 kb on - strand at 2179.402 kb on + strand at 2179.405 kb on - strand at 2179.412 kb on + strand at 2179.423 kb on + strand at 2179.497 kb on - strand at 2179.501 kb on - strand at 2179.562 kb on - strand at 2179.609 kb on + strand, within PGA1_c21000 at 2179.610 kb on - strand, within PGA1_c21000 at 2179.612 kb on + strand, within PGA1_c21000 at 2179.614 kb on + strand, within PGA1_c21000 at 2179.617 kb on - strand, within PGA1_c21000 at 2179.617 kb on - strand, within PGA1_c21000 at 2179.726 kb on - strand, within PGA1_c21000 at 2179.728 kb on - strand, within PGA1_c21000 at 2179.745 kb on + strand, within PGA1_c21000 at 2179.814 kb on + strand, within PGA1_c21000 at 2179.866 kb on + strand at 2180.129 kb on - strand, within PGA1_c21010 at 2180.240 kb on - strand, within PGA1_c21010 at 2180.275 kb on + strand, within PGA1_c21010 at 2180.275 kb on + strand, within PGA1_c21010 at 2180.280 kb on + strand, within PGA1_c21010 at 2180.283 kb on - strand, within PGA1_c21010 at 2180.285 kb on - strand, within PGA1_c21010 at 2180.392 kb on + strand, within PGA1_c21010 at 2180.397 kb on + strand, within PGA1_c21010 at 2180.514 kb on - strand, within PGA1_c21010 at 2180.514 kb on - strand, within PGA1_c21010 at 2180.514 kb on - strand, within PGA1_c21010 at 2180.520 kb on + strand, within PGA1_c21010 at 2180.528 kb on - strand, within PGA1_c21010 at 2180.567 kb on - strand, within PGA1_c21010 at 2180.592 kb on - strand, within PGA1_c21010 at 2180.613 kb on + strand, within PGA1_c21010 at 2180.621 kb on - strand, within PGA1_c21010 at 2180.729 kb on + strand at 2180.743 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,179,295 + +0.4 2,179,360 + -0.1 2,179,368 - -1.3 2,179,402 + -0.6 2,179,405 - -0.5 2,179,412 + -0.2 2,179,423 + -0.4 2,179,497 - -0.1 2,179,501 - +0.5 2,179,562 - +0.4 2,179,609 + PGA1_c21000 0.18 +0.7 2,179,610 - PGA1_c21000 0.18 +0.1 2,179,612 + PGA1_c21000 0.19 +0.4 2,179,614 + PGA1_c21000 0.20 -0.0 2,179,617 - PGA1_c21000 0.21 +0.5 2,179,617 - PGA1_c21000 0.21 +1.1 2,179,726 - PGA1_c21000 0.56 +0.9 2,179,728 - PGA1_c21000 0.57 +0.2 2,179,745 + PGA1_c21000 0.62 +0.4 2,179,814 + PGA1_c21000 0.85 -0.4 2,179,866 + -0.0 2,180,129 - PGA1_c21010 0.24 -0.1 2,180,240 - PGA1_c21010 0.37 -0.1 2,180,275 + PGA1_c21010 0.41 +1.4 2,180,275 + PGA1_c21010 0.41 -1.2 2,180,280 + PGA1_c21010 0.41 -0.0 2,180,283 - PGA1_c21010 0.42 -1.7 2,180,285 - PGA1_c21010 0.42 +0.4 2,180,392 + PGA1_c21010 0.55 +0.1 2,180,397 + PGA1_c21010 0.55 +0.7 2,180,514 - PGA1_c21010 0.69 -0.5 2,180,514 - PGA1_c21010 0.69 -0.3 2,180,514 - PGA1_c21010 0.69 +0.1 2,180,520 + PGA1_c21010 0.70 -0.8 2,180,528 - PGA1_c21010 0.71 -0.1 2,180,567 - PGA1_c21010 0.75 +0.9 2,180,592 - PGA1_c21010 0.78 +0.7 2,180,613 + PGA1_c21010 0.81 -0.9 2,180,621 - PGA1_c21010 0.82 +0.1 2,180,729 + -0.2 2,180,743 + -0.1
Or see this region's nucleotide sequence