Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19870

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19860 and PGA1_c19870 are separated by 141 nucleotidesPGA1_c19870 and PGA1_c19880 are separated by 224 nucleotides PGA1_c19860: PGA1_c19860 - dimethyladenosine transferase KsgA, at 2,061,859 to 2,062,704 _c19860 PGA1_c19870: PGA1_c19870 - hypothetical protein, at 2,062,846 to 2,063,565 _c19870 PGA1_c19880: PGA1_c19880 - methyltransferase, HemK family, at 2,063,790 to 2,064,647 _c19880 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -2 -1 0 1at 2061.880 kb on - strandat 2061.886 kb on - strandat 2061.888 kb on + strandat 2062.043 kb on + strand, within PGA1_c19860at 2062.064 kb on - strand, within PGA1_c19860at 2062.064 kb on - strand, within PGA1_c19860at 2062.095 kb on - strand, within PGA1_c19860at 2062.139 kb on - strand, within PGA1_c19860at 2062.169 kb on + strand, within PGA1_c19860at 2062.174 kb on + strand, within PGA1_c19860at 2062.192 kb on - strand, within PGA1_c19860at 2062.292 kb on + strand, within PGA1_c19860at 2062.343 kb on - strand, within PGA1_c19860at 2062.368 kb on - strand, within PGA1_c19860at 2062.406 kb on + strand, within PGA1_c19860at 2062.549 kb on - strand, within PGA1_c19860at 2062.573 kb on + strand, within PGA1_c19860at 2062.616 kb on - strand, within PGA1_c19860at 2062.650 kb on + strandat 2062.650 kb on + strandat 2062.663 kb on - strandat 2062.672 kb on + strandat 2062.698 kb on + strandat 2062.701 kb on - strandat 2062.726 kb on - strandat 2062.918 kb on - strand, within PGA1_c19870at 2063.023 kb on - strand, within PGA1_c19870at 2063.044 kb on - strand, within PGA1_c19870at 2063.582 kb on - strandat 2063.812 kb on - strandat 2063.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,061,880 - +0.0
2,061,886 - -0.1
2,061,888 + -0.0
2,062,043 + PGA1_c19860 0.22 -0.6
2,062,064 - PGA1_c19860 0.24 -0.7
2,062,064 - PGA1_c19860 0.24 +0.1
2,062,095 - PGA1_c19860 0.28 +0.2
2,062,139 - PGA1_c19860 0.33 -0.4
2,062,169 + PGA1_c19860 0.37 -0.6
2,062,174 + PGA1_c19860 0.37 -1.0
2,062,192 - PGA1_c19860 0.39 -0.0
2,062,292 + PGA1_c19860 0.51 -0.1
2,062,343 - PGA1_c19860 0.57 -0.6
2,062,368 - PGA1_c19860 0.60 -0.8
2,062,406 + PGA1_c19860 0.65 -0.9
2,062,549 - PGA1_c19860 0.82 +0.5
2,062,573 + PGA1_c19860 0.84 +0.3
2,062,616 - PGA1_c19860 0.89 +0.5
2,062,650 + -2.5
2,062,650 + +0.4
2,062,663 - -0.4
2,062,672 + -1.3
2,062,698 + +0.4
2,062,701 - +0.5
2,062,726 - +0.1
2,062,918 - PGA1_c19870 0.10 -0.0
2,063,023 - PGA1_c19870 0.25 +0.3
2,063,044 - PGA1_c19870 0.28 +0.9
2,063,582 - +0.0
2,063,812 - +0.2
2,063,817 + +0.1

Or see this region's nucleotide sequence