Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19680 and PGA1_c19690 are separated by 112 nucleotides PGA1_c19690 and PGA1_c19700 are separated by 121 nucleotides
PGA1_c19680: PGA1_c19680 - putative transcriptional regulator, crp family, at 2,043,317 to 2,043,985
_c19680
PGA1_c19690: PGA1_c19690 - Protein of unknown function (DUF2892)., at 2,044,098 to 2,044,310
_c19690
PGA1_c19700: PGA1_c19700 - sulfate transporter, at 2,044,432 to 2,046,186
_c19700
Position (kb)
2044
2045 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2043.114 kb on - strand at 2043.118 kb on + strand at 2043.131 kb on - strand at 2043.167 kb on - strand at 2043.179 kb on + strand at 2043.179 kb on + strand at 2043.179 kb on + strand at 2043.187 kb on - strand at 2043.187 kb on - strand at 2043.240 kb on - strand at 2043.242 kb on + strand at 2043.247 kb on + strand at 2043.250 kb on - strand at 2043.253 kb on + strand at 2043.258 kb on + strand at 2043.273 kb on + strand at 2043.291 kb on + strand at 2043.356 kb on + strand at 2043.364 kb on - strand at 2043.514 kb on - strand, within PGA1_c19680 at 2043.551 kb on + strand, within PGA1_c19680 at 2043.558 kb on + strand, within PGA1_c19680 at 2043.559 kb on - strand, within PGA1_c19680 at 2043.566 kb on - strand, within PGA1_c19680 at 2043.581 kb on - strand, within PGA1_c19680 at 2043.612 kb on + strand, within PGA1_c19680 at 2043.774 kb on + strand, within PGA1_c19680 at 2043.793 kb on - strand, within PGA1_c19680 at 2043.805 kb on + strand, within PGA1_c19680 at 2043.842 kb on - strand, within PGA1_c19680 at 2043.854 kb on + strand, within PGA1_c19680 at 2043.854 kb on + strand, within PGA1_c19680 at 2043.862 kb on - strand, within PGA1_c19680 at 2043.867 kb on + strand, within PGA1_c19680 at 2043.873 kb on + strand, within PGA1_c19680 at 2043.920 kb on - strand at 2043.987 kb on - strand at 2044.067 kb on + strand at 2044.147 kb on + strand, within PGA1_c19690 at 2044.147 kb on + strand, within PGA1_c19690 at 2044.152 kb on + strand, within PGA1_c19690 at 2044.154 kb on + strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.217 kb on - strand, within PGA1_c19690 at 2044.233 kb on - strand, within PGA1_c19690 at 2044.256 kb on + strand, within PGA1_c19690 at 2044.342 kb on - strand at 2044.385 kb on - strand at 2044.395 kb on + strand at 2044.395 kb on + strand at 2044.403 kb on - strand at 2044.413 kb on - strand at 2044.435 kb on - strand at 2044.441 kb on + strand at 2044.441 kb on + strand at 2044.444 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.462 kb on + strand at 2044.470 kb on - strand at 2044.480 kb on + strand at 2044.490 kb on + strand at 2044.495 kb on + strand at 2044.702 kb on - strand, within PGA1_c19700 at 2044.846 kb on + strand, within PGA1_c19700 at 2044.862 kb on + strand, within PGA1_c19700 at 2044.895 kb on - strand, within PGA1_c19700 at 2044.905 kb on + strand, within PGA1_c19700 at 2044.910 kb on + strand, within PGA1_c19700 at 2044.910 kb on + strand, within PGA1_c19700 at 2044.913 kb on - strand, within PGA1_c19700 at 2044.918 kb on - strand, within PGA1_c19700 at 2044.918 kb on - strand, within PGA1_c19700 at 2044.919 kb on + strand, within PGA1_c19700 at 2044.919 kb on + strand, within PGA1_c19700 at 2044.927 kb on - strand at 2044.989 kb on + strand, within PGA1_c19700 at 2045.008 kb on - strand, within PGA1_c19700 at 2045.029 kb on - strand, within PGA1_c19700 at 2045.200 kb on + strand, within PGA1_c19700 at 2045.226 kb on + strand, within PGA1_c19700 at 2045.255 kb on - strand, within PGA1_c19700 at 2045.299 kb on + strand, within PGA1_c19700 at 2045.307 kb on - strand, within PGA1_c19700
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,043,114 - +0.9 2,043,118 + -1.1 2,043,131 - +1.8 2,043,167 - -0.4 2,043,179 + +1.0 2,043,179 + -0.0 2,043,179 + -1.3 2,043,187 - -0.3 2,043,187 - -1.0 2,043,240 - +0.0 2,043,242 + -0.4 2,043,247 + -0.5 2,043,250 - -0.3 2,043,253 + +0.7 2,043,258 + +0.4 2,043,273 + -0.7 2,043,291 + -0.7 2,043,356 + -0.0 2,043,364 - -0.2 2,043,514 - PGA1_c19680 0.29 +0.2 2,043,551 + PGA1_c19680 0.35 -0.2 2,043,558 + PGA1_c19680 0.36 +1.3 2,043,559 - PGA1_c19680 0.36 -0.1 2,043,566 - PGA1_c19680 0.37 +0.1 2,043,581 - PGA1_c19680 0.39 -1.7 2,043,612 + PGA1_c19680 0.44 -0.7 2,043,774 + PGA1_c19680 0.68 +0.7 2,043,793 - PGA1_c19680 0.71 +0.6 2,043,805 + PGA1_c19680 0.73 -0.8 2,043,842 - PGA1_c19680 0.78 +0.2 2,043,854 + PGA1_c19680 0.80 -0.7 2,043,854 + PGA1_c19680 0.80 -0.3 2,043,862 - PGA1_c19680 0.81 -0.8 2,043,867 + PGA1_c19680 0.82 +0.6 2,043,873 + PGA1_c19680 0.83 -1.3 2,043,920 - -0.2 2,043,987 - -0.6 2,044,067 + -0.7 2,044,147 + PGA1_c19690 0.23 -0.7 2,044,147 + PGA1_c19690 0.23 +0.4 2,044,152 + PGA1_c19690 0.25 +0.8 2,044,154 + PGA1_c19690 0.26 +0.3 2,044,155 - PGA1_c19690 0.27 +0.4 2,044,155 - PGA1_c19690 0.27 +0.3 2,044,155 - PGA1_c19690 0.27 +0.8 2,044,217 - PGA1_c19690 0.56 -0.7 2,044,233 - PGA1_c19690 0.63 +0.8 2,044,256 + PGA1_c19690 0.74 +0.8 2,044,342 - -0.1 2,044,385 - -0.4 2,044,395 + +0.0 2,044,395 + -0.8 2,044,403 - -1.9 2,044,413 - +0.9 2,044,435 - -0.7 2,044,441 + -0.5 2,044,441 + +0.8 2,044,444 - +0.3 2,044,449 - -0.2 2,044,449 - -0.7 2,044,449 - +0.3 2,044,449 - -0.4 2,044,449 - -0.6 2,044,449 - +0.3 2,044,462 + -0.6 2,044,470 - -0.3 2,044,480 + -0.5 2,044,490 + +0.3 2,044,495 + +0.4 2,044,702 - PGA1_c19700 0.15 -0.3 2,044,846 + PGA1_c19700 0.24 +1.5 2,044,862 + PGA1_c19700 0.25 +0.0 2,044,895 - PGA1_c19700 0.26 -0.5 2,044,905 + PGA1_c19700 0.27 +0.1 2,044,910 + PGA1_c19700 0.27 -0.9 2,044,910 + PGA1_c19700 0.27 +0.5 2,044,913 - PGA1_c19700 0.27 -1.2 2,044,918 - PGA1_c19700 0.28 -0.0 2,044,918 - PGA1_c19700 0.28 +0.4 2,044,919 + PGA1_c19700 0.28 +0.3 2,044,919 + PGA1_c19700 0.28 -0.2 2,044,927 - -0.1 2,044,989 + PGA1_c19700 0.32 +1.0 2,045,008 - PGA1_c19700 0.33 +0.4 2,045,029 - PGA1_c19700 0.34 +0.0 2,045,200 + PGA1_c19700 0.44 -0.4 2,045,226 + PGA1_c19700 0.45 -1.3 2,045,255 - PGA1_c19700 0.47 +0.3 2,045,299 + PGA1_c19700 0.49 +0.7 2,045,307 - PGA1_c19700 0.50 +1.6
Or see this region's nucleotide sequence