Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19180 and PGA1_c19190 overlap by 4 nucleotides PGA1_c19190 and PGA1_c19200 are separated by 5 nucleotides PGA1_c19200 and PGA1_c19210 are separated by 162 nucleotides PGA1_c19210 and PGA1_c19220 are separated by 25 nucleotides
PGA1_c19180: PGA1_c19180 - cytochrome c-type biogenesis protein CycH, at 1,992,061 to 1,993,317
_c19180
PGA1_c19190: PGA1_c19190 - RNAse H-fold protein YqgF, at 1,993,314 to 1,993,787
_c19190
PGA1_c19200: PGA1_c19200 - Predicted Fe-S protein, at 1,993,793 to 1,994,026
_c19200
PGA1_c19210: PGA1_c19210 - hypothetical protein, at 1,994,189 to 1,994,983
_c19210
PGA1_c19220: PGA1_c19220 - Predicted permeases, at 1,995,009 to 1,995,875
_c19220
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1993.106 kb on + strand, within PGA1_c19180 at 1993.157 kb on + strand, within PGA1_c19180 at 1993.245 kb on + strand at 1993.780 kb on - strand at 1993.790 kb on - strand at 1993.870 kb on + strand, within PGA1_c19200 at 1993.948 kb on + strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1993.956 kb on - strand, within PGA1_c19200 at 1994.054 kb on + strand at 1994.064 kb on + strand at 1994.186 kb on - strand at 1994.201 kb on + strand at 1994.202 kb on + strand at 1994.258 kb on + strand at 1994.269 kb on - strand, within PGA1_c19210 at 1994.301 kb on - strand, within PGA1_c19210 at 1994.308 kb on + strand, within PGA1_c19210 at 1994.316 kb on - strand, within PGA1_c19210 at 1994.325 kb on + strand, within PGA1_c19210 at 1994.370 kb on + strand, within PGA1_c19210 at 1994.429 kb on - strand, within PGA1_c19210 at 1994.439 kb on - strand, within PGA1_c19210 at 1994.484 kb on - strand, within PGA1_c19210 at 1994.487 kb on - strand, within PGA1_c19210 at 1994.491 kb on + strand, within PGA1_c19210 at 1994.515 kb on + strand, within PGA1_c19210 at 1994.543 kb on + strand, within PGA1_c19210 at 1994.642 kb on - strand, within PGA1_c19210 at 1994.674 kb on + strand, within PGA1_c19210 at 1994.805 kb on + strand, within PGA1_c19210 at 1994.805 kb on + strand, within PGA1_c19210 at 1994.813 kb on - strand, within PGA1_c19210 at 1994.882 kb on + strand, within PGA1_c19210 at 1994.890 kb on - strand, within PGA1_c19210 at 1994.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,993,106 + PGA1_c19180 0.83 +0.4 1,993,157 + PGA1_c19180 0.87 +0.2 1,993,245 + -0.1 1,993,780 - -0.5 1,993,790 - +0.1 1,993,870 + PGA1_c19200 0.33 +2.8 1,993,948 + PGA1_c19200 0.66 +0.6 1,993,956 - PGA1_c19200 0.70 -0.6 1,993,956 - PGA1_c19200 0.70 -0.2 1,993,956 - PGA1_c19200 0.70 +0.5 1,994,054 + +1.6 1,994,064 + +0.1 1,994,186 - +0.1 1,994,201 + +0.5 1,994,202 + -0.1 1,994,258 + +0.4 1,994,269 - PGA1_c19210 0.10 -0.2 1,994,301 - PGA1_c19210 0.14 -1.2 1,994,308 + PGA1_c19210 0.15 +0.4 1,994,316 - PGA1_c19210 0.16 +0.0 1,994,325 + PGA1_c19210 0.17 +0.2 1,994,370 + PGA1_c19210 0.23 -0.4 1,994,429 - PGA1_c19210 0.30 -0.9 1,994,439 - PGA1_c19210 0.31 -1.2 1,994,484 - PGA1_c19210 0.37 -0.7 1,994,487 - PGA1_c19210 0.37 -0.4 1,994,491 + PGA1_c19210 0.38 -1.3 1,994,515 + PGA1_c19210 0.41 +0.6 1,994,543 + PGA1_c19210 0.45 -0.3 1,994,642 - PGA1_c19210 0.57 -1.4 1,994,674 + PGA1_c19210 0.61 -0.7 1,994,805 + PGA1_c19210 0.77 +0.6 1,994,805 + PGA1_c19210 0.77 +0.7 1,994,813 - PGA1_c19210 0.78 +0.2 1,994,882 + PGA1_c19210 0.87 -0.5 1,994,890 - PGA1_c19210 0.88 +0.0 1,994,925 - +0.4
Or see this region's nucleotide sequence