Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18850

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18830 and PGA1_c18850 are separated by 240 nucleotidesPGA1_c18850 and PGA1_c18860 are separated by 88 nucleotidesPGA1_c18860 and PGA1_c18865 overlap by 8 nucleotidesPGA1_c18865 and PGA1_c18870 overlap by 4 nucleotides PGA1_c18830: PGA1_c18830 - aconitate hydratase AcnA, at 1,955,173 to 1,957,860 _c18830 PGA1_c18850: PGA1_c18850 - Antibiotic biosynthesis monooxygenase., at 1,958,101 to 1,958,412 _c18850 PGA1_c18860: PGA1_c18860 - thiol:disulfide interchange protein CcmG, at 1,958,501 to 1,959,040 _c18860 PGA1_c18865: PGA1_c18865 - heme exporter protein D, at 1,959,033 to 1,959,206 _c18865 PGA1_c18870: PGA1_c18870 - heme exporter protein C, at 1,959,203 to 1,959,934 _c18870 Position (kb) 1958 1959Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1957.830 kb on - strandat 1957.830 kb on - strandat 1957.835 kb on - strandat 1957.885 kb on - strandat 1957.891 kb on + strandat 1957.891 kb on + strandat 1957.891 kb on + strandat 1957.891 kb on + strandat 1957.899 kb on - strandat 1957.900 kb on - strandat 1958.018 kb on - strandat 1958.083 kb on + strandat 1958.083 kb on + strandat 1958.091 kb on + strandat 1958.091 kb on + strandat 1958.099 kb on - strandat 1958.099 kb on - strandat 1958.099 kb on - strandat 1958.137 kb on + strand, within PGA1_c18850at 1958.151 kb on - strand, within PGA1_c18850at 1958.242 kb on + strand, within PGA1_c18850at 1958.245 kb on + strand, within PGA1_c18850at 1958.323 kb on - strand, within PGA1_c18850at 1958.365 kb on - strand, within PGA1_c18850at 1958.367 kb on + strand, within PGA1_c18850at 1958.396 kb on + strandat 1958.463 kb on - strandat 1958.467 kb on + strandat 1958.467 kb on + strandat 1958.467 kb on + strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strandat 1958.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,957,830 - -2.0
1,957,830 - -1.0
1,957,835 - -1.2
1,957,885 - -0.5
1,957,891 + -0.2
1,957,891 + -0.6
1,957,891 + +0.5
1,957,891 + -0.6
1,957,899 - +0.3
1,957,900 - -0.1
1,958,018 - -0.2
1,958,083 + +0.1
1,958,083 + +0.2
1,958,091 + +0.5
1,958,091 + +0.2
1,958,099 - -1.5
1,958,099 - +3.1
1,958,099 - -0.3
1,958,137 + PGA1_c18850 0.12 +0.6
1,958,151 - PGA1_c18850 0.16 +1.2
1,958,242 + PGA1_c18850 0.45 -0.7
1,958,245 + PGA1_c18850 0.46 +0.9
1,958,323 - PGA1_c18850 0.71 -0.9
1,958,365 - PGA1_c18850 0.85 +0.1
1,958,367 + PGA1_c18850 0.85 +0.4
1,958,396 + +0.3
1,958,463 - +0.2
1,958,467 + -0.9
1,958,467 + +0.2
1,958,467 + -0.6
1,958,475 - +0.1
1,958,475 - +0.3
1,958,475 - -0.3
1,958,475 - -1.3
1,958,475 - +1.3
1,958,475 - +0.4
1,958,475 - -0.5
1,958,475 - +0.1
1,958,475 - +0.3
1,958,475 - -0.6
1,958,475 - -0.0
1,958,475 - +1.1
1,958,475 - -0.6
1,958,475 - +1.0
1,958,475 - +0.2
1,958,475 - -0.4
1,958,475 - -0.5
1,958,475 - -1.2

Or see this region's nucleotide sequence