Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c18830 and PGA1_c18850 are separated by 240 nucleotides PGA1_c18850 and PGA1_c18860 are separated by 88 nucleotides PGA1_c18860 and PGA1_c18865 overlap by 8 nucleotides PGA1_c18865 and PGA1_c18870 overlap by 4 nucleotides
PGA1_c18830: PGA1_c18830 - aconitate hydratase AcnA, at 1,955,173 to 1,957,860
_c18830
PGA1_c18850: PGA1_c18850 - Antibiotic biosynthesis monooxygenase., at 1,958,101 to 1,958,412
_c18850
PGA1_c18860: PGA1_c18860 - thiol:disulfide interchange protein CcmG, at 1,958,501 to 1,959,040
_c18860
PGA1_c18865: PGA1_c18865 - heme exporter protein D, at 1,959,033 to 1,959,206
_c18865
PGA1_c18870: PGA1_c18870 - heme exporter protein C, at 1,959,203 to 1,959,934
_c18870
Position (kb)
1958
1959 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1957.830 kb on - strand at 1957.830 kb on - strand at 1957.835 kb on - strand at 1957.885 kb on - strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.891 kb on + strand at 1957.899 kb on - strand at 1957.900 kb on - strand at 1958.018 kb on - strand at 1958.083 kb on + strand at 1958.083 kb on + strand at 1958.091 kb on + strand at 1958.091 kb on + strand at 1958.099 kb on - strand at 1958.099 kb on - strand at 1958.099 kb on - strand at 1958.137 kb on + strand, within PGA1_c18850 at 1958.151 kb on - strand, within PGA1_c18850 at 1958.242 kb on + strand, within PGA1_c18850 at 1958.245 kb on + strand, within PGA1_c18850 at 1958.323 kb on - strand, within PGA1_c18850 at 1958.365 kb on - strand, within PGA1_c18850 at 1958.367 kb on + strand, within PGA1_c18850 at 1958.396 kb on + strand at 1958.463 kb on - strand at 1958.467 kb on + strand at 1958.467 kb on + strand at 1958.467 kb on + strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand at 1958.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,957,830 - -2.0 1,957,830 - -1.0 1,957,835 - -1.2 1,957,885 - -0.5 1,957,891 + -0.2 1,957,891 + -0.6 1,957,891 + +0.5 1,957,891 + -0.6 1,957,899 - +0.3 1,957,900 - -0.1 1,958,018 - -0.2 1,958,083 + +0.1 1,958,083 + +0.2 1,958,091 + +0.5 1,958,091 + +0.2 1,958,099 - -1.5 1,958,099 - +3.1 1,958,099 - -0.3 1,958,137 + PGA1_c18850 0.12 +0.6 1,958,151 - PGA1_c18850 0.16 +1.2 1,958,242 + PGA1_c18850 0.45 -0.7 1,958,245 + PGA1_c18850 0.46 +0.9 1,958,323 - PGA1_c18850 0.71 -0.9 1,958,365 - PGA1_c18850 0.85 +0.1 1,958,367 + PGA1_c18850 0.85 +0.4 1,958,396 + +0.3 1,958,463 - +0.2 1,958,467 + -0.9 1,958,467 + +0.2 1,958,467 + -0.6 1,958,475 - +0.1 1,958,475 - +0.3 1,958,475 - -0.3 1,958,475 - -1.3 1,958,475 - +1.3 1,958,475 - +0.4 1,958,475 - -0.5 1,958,475 - +0.1 1,958,475 - +0.3 1,958,475 - -0.6 1,958,475 - -0.0 1,958,475 - +1.1 1,958,475 - -0.6 1,958,475 - +1.0 1,958,475 - +0.2 1,958,475 - -0.4 1,958,475 - -0.5 1,958,475 - -1.2
Or see this region's nucleotide sequence