Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18820

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18810 and PGA1_c18820 are separated by 14 nucleotidesPGA1_c18820 and PGA1_c18830 are separated by 245 nucleotides PGA1_c18810: PGA1_c18810 - putative lipid A biosynthesis acyltransferase, at 1,953,246 to 1,954,181 _c18810 PGA1_c18820: PGA1_c18820 - Uncharacterized secreted protein, at 1,954,196 to 1,954,927 _c18820 PGA1_c18830: PGA1_c18830 - aconitate hydratase AcnA, at 1,955,173 to 1,957,860 _c18830 Position (kb) 1954 1955Strain fitness (log2 ratio) -2 -1 0 1at 1953.660 kb on + strand, within PGA1_c18810at 1954.296 kb on - strand, within PGA1_c18820at 1954.303 kb on + strand, within PGA1_c18820at 1954.450 kb on - strand, within PGA1_c18820at 1954.623 kb on + strand, within PGA1_c18820at 1954.623 kb on + strand, within PGA1_c18820at 1954.623 kb on + strand, within PGA1_c18820at 1954.631 kb on - strand, within PGA1_c18820at 1954.652 kb on + strand, within PGA1_c18820at 1954.660 kb on - strand, within PGA1_c18820at 1954.733 kb on - strand, within PGA1_c18820at 1954.797 kb on + strand, within PGA1_c18820at 1954.843 kb on - strand, within PGA1_c18820at 1954.859 kb on + strandat 1954.867 kb on - strandat 1954.949 kb on + strandat 1954.971 kb on + strandat 1954.971 kb on + strandat 1954.971 kb on + strandat 1954.979 kb on - strandat 1954.979 kb on - strandat 1954.979 kb on - strandat 1955.005 kb on + strandat 1955.005 kb on + strandat 1955.005 kb on + strandat 1955.005 kb on + strandat 1955.013 kb on - strandat 1955.013 kb on - strandat 1955.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,953,660 + PGA1_c18810 0.44 -2.4
1,954,296 - PGA1_c18820 0.14 -1.2
1,954,303 + PGA1_c18820 0.15 -0.0
1,954,450 - PGA1_c18820 0.35 +0.7
1,954,623 + PGA1_c18820 0.58 +1.0
1,954,623 + PGA1_c18820 0.58 +0.2
1,954,623 + PGA1_c18820 0.58 +0.6
1,954,631 - PGA1_c18820 0.59 -0.7
1,954,652 + PGA1_c18820 0.62 +0.1
1,954,660 - PGA1_c18820 0.63 +0.4
1,954,733 - PGA1_c18820 0.73 +1.2
1,954,797 + PGA1_c18820 0.82 +0.5
1,954,843 - PGA1_c18820 0.88 -1.8
1,954,859 + -1.2
1,954,867 - -0.3
1,954,949 + -0.5
1,954,971 + -0.2
1,954,971 + +0.1
1,954,971 + +0.1
1,954,979 - -0.8
1,954,979 - +0.4
1,954,979 - +0.2
1,955,005 + -0.6
1,955,005 + -0.4
1,955,005 + -0.0
1,955,005 + -1.3
1,955,013 - -0.1
1,955,013 - -0.0
1,955,023 - -1.4

Or see this region's nucleotide sequence