Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18720

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c18700 and PGA1_c18710 are separated by 192 nucleotidesPGA1_c18710 and PGA1_c18720 are separated by 93 nucleotidesPGA1_c18720 and PGA1_c18730 are separated by 534 nucleotides PGA1_c18700: PGA1_c18700 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 1,939,645 to 1,941,342 _c18700 PGA1_c18710: PGA1_c18710 - nitrogen regulatory protein P-II, at 1,941,535 to 1,941,873 _c18710 PGA1_c18720: PGA1_c18720 - glutamine synthetase GlnA, at 1,941,967 to 1,943,373 _c18720 PGA1_c18730: PGA1_c18730 - hypothetical protein, at 1,943,908 to 1,944,933 _c18730 Position (kb) 1941 1942 1943 1944Strain fitness (log2 ratio) -2 -1 0 1 2at 1940.975 kb on - strand, within PGA1_c18700at 1940.983 kb on - strand, within PGA1_c18700at 1940.983 kb on - strand, within PGA1_c18700at 1940.983 kb on - strand, within PGA1_c18700at 1940.983 kb on - strand, within PGA1_c18700at 1941.065 kb on - strand, within PGA1_c18700at 1941.081 kb on - strand, within PGA1_c18700at 1941.109 kb on + strand, within PGA1_c18700at 1941.117 kb on - strand, within PGA1_c18700at 1941.117 kb on - strand, within PGA1_c18700at 1941.130 kb on + strand, within PGA1_c18700at 1941.130 kb on + strand, within PGA1_c18700at 1941.135 kb on + strand, within PGA1_c18700at 1941.165 kb on - strand, within PGA1_c18700at 1941.169 kb on + strand, within PGA1_c18700at 1941.169 kb on + strand, within PGA1_c18700at 1941.169 kb on + strand, within PGA1_c18700at 1941.177 kb on - strandat 1941.177 kb on - strandat 1941.177 kb on - strandat 1941.177 kb on - strandat 1941.177 kb on - strandat 1941.177 kb on - strandat 1941.239 kb on - strandat 1941.245 kb on - strandat 1941.269 kb on - strandat 1941.300 kb on + strandat 1941.300 kb on + strandat 1941.300 kb on + strandat 1941.300 kb on + strandat 1941.308 kb on - strandat 1941.308 kb on - strandat 1941.308 kb on - strandat 1941.313 kb on + strandat 1941.313 kb on + strandat 1941.313 kb on + strandat 1941.313 kb on + strandat 1941.313 kb on + strandat 1941.321 kb on - strandat 1941.350 kb on - strandat 1941.867 kb on + strandat 1941.867 kb on + strandat 1941.874 kb on + strandat 1941.923 kb on + strandat 1941.948 kb on + strandat 1943.437 kb on + strandat 1943.438 kb on + strandat 1943.445 kb on - strandat 1943.445 kb on - strandat 1943.445 kb on - strandat 1943.446 kb on - strandat 1943.463 kb on - strandat 1943.475 kb on - strandat 1943.493 kb on + strandat 1943.497 kb on - strandat 1943.506 kb on + strandat 1943.511 kb on + strandat 1943.545 kb on + strandat 1943.568 kb on + strandat 1943.591 kb on - strandat 1943.598 kb on + strandat 1943.618 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.619 kb on + strandat 1943.624 kb on + strandat 1943.626 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.627 kb on - strandat 1943.632 kb on - strandat 1943.633 kb on - strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.655 kb on + strandat 1943.663 kb on - strandat 1943.663 kb on - strandat 1943.663 kb on - strandat 1943.663 kb on - strandat 1943.681 kb on + strandat 1943.689 kb on - strandat 1943.689 kb on - strandat 1943.700 kb on + strandat 1943.700 kb on + strandat 1943.700 kb on + strandat 1943.700 kb on + strandat 1943.708 kb on - strandat 1943.708 kb on - strandat 1943.708 kb on - strandat 1943.710 kb on + strandat 1943.710 kb on + strandat 1943.710 kb on + strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.718 kb on - strandat 1943.744 kb on + strandat 1943.797 kb on - strandat 1943.833 kb on + strandat 1943.833 kb on + strandat 1943.833 kb on + strandat 1943.836 kb on + strandat 1943.836 kb on + strandat 1943.836 kb on - strandat 1943.841 kb on - strandat 1943.842 kb on + strandat 1943.887 kb on + strandat 1943.887 kb on + strandat 1943.887 kb on + strandat 1943.887 kb on + strandat 1943.887 kb on + strandat 1943.887 kb on + strandat 1943.890 kb on + strandat 1943.890 kb on + strandat 1943.895 kb on - strandat 1943.895 kb on - strandat 1943.895 kb on - strandat 1943.895 kb on - strandat 1943.895 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.898 kb on - strandat 1943.899 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.900 kb on + strandat 1943.906 kb on + strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.908 kb on - strandat 1943.910 kb on + strandat 1943.914 kb on - strandat 1943.915 kb on + strandat 1943.923 kb on - strandat 1943.923 kb on - strandat 1943.923 kb on - strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.925 kb on + strandat 1943.933 kb on - strandat 1943.933 kb on - strandat 1943.933 kb on - strandat 1943.933 kb on - strandat 1943.933 kb on - strandat 1943.965 kb on - strandat 1943.978 kb on - strandat 1943.978 kb on - strandat 1943.978 kb on - strandat 1944.022 kb on - strand, within PGA1_c18730at 1944.044 kb on + strand, within PGA1_c18730at 1944.044 kb on + strand, within PGA1_c18730at 1944.052 kb on - strand, within PGA1_c18730at 1944.080 kb on + strand, within PGA1_c18730at 1944.081 kb on + strand, within PGA1_c18730at 1944.088 kb on - strand, within PGA1_c18730at 1944.088 kb on - strand, within PGA1_c18730at 1944.090 kb on + strand, within PGA1_c18730at 1944.095 kb on + strand, within PGA1_c18730at 1944.113 kb on + strand, within PGA1_c18730at 1944.118 kb on + strand, within PGA1_c18730at 1944.121 kb on - strand, within PGA1_c18730at 1944.126 kb on - strand, within PGA1_c18730at 1944.131 kb on - strand, within PGA1_c18730at 1944.165 kb on - strand, within PGA1_c18730at 1944.197 kb on + strand, within PGA1_c18730at 1944.205 kb on - strand, within PGA1_c18730at 1944.205 kb on - strand, within PGA1_c18730at 1944.265 kb on + strand, within PGA1_c18730at 1944.266 kb on + strand, within PGA1_c18730at 1944.266 kb on - strand, within PGA1_c18730at 1944.295 kb on + strand, within PGA1_c18730at 1944.302 kb on + strand, within PGA1_c18730at 1944.302 kb on + strand, within PGA1_c18730at 1944.365 kb on - strand, within PGA1_c18730at 1944.373 kb on - strand, within PGA1_c18730

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,940,975 - PGA1_c18700 0.78 -0.5
1,940,983 - PGA1_c18700 0.79 -0.6
1,940,983 - PGA1_c18700 0.79 -0.5
1,940,983 - PGA1_c18700 0.79 -0.2
1,940,983 - PGA1_c18700 0.79 +0.7
1,941,065 - PGA1_c18700 0.84 -0.1
1,941,081 - PGA1_c18700 0.85 -0.3
1,941,109 + PGA1_c18700 0.86 -0.8
1,941,117 - PGA1_c18700 0.87 -0.5
1,941,117 - PGA1_c18700 0.87 -0.1
1,941,130 + PGA1_c18700 0.87 -0.6
1,941,130 + PGA1_c18700 0.87 +1.2
1,941,135 + PGA1_c18700 0.88 +0.4
1,941,165 - PGA1_c18700 0.90 -1.2
1,941,169 + PGA1_c18700 0.90 -1.3
1,941,169 + PGA1_c18700 0.90 -0.2
1,941,169 + PGA1_c18700 0.90 -0.4
1,941,177 - -0.4
1,941,177 - -1.0
1,941,177 - -0.3
1,941,177 - +1.2
1,941,177 - -0.9
1,941,177 - -1.1
1,941,239 - -0.1
1,941,245 - +0.5
1,941,269 - +0.5
1,941,300 + -0.2
1,941,300 + +0.1
1,941,300 + -0.4
1,941,300 + -0.9
1,941,308 - +0.0
1,941,308 - -1.1
1,941,308 - -0.1
1,941,313 + +0.1
1,941,313 + +1.0
1,941,313 + -0.1
1,941,313 + -0.2
1,941,313 + -0.2
1,941,321 - -0.1
1,941,350 - -0.7
1,941,867 + +0.5
1,941,867 + +0.1
1,941,874 + -0.7
1,941,923 + -1.7
1,941,948 + -1.3
1,943,437 + +0.3
1,943,438 + -0.2
1,943,445 - -0.0
1,943,445 - +0.4
1,943,445 - -0.0
1,943,446 - +0.2
1,943,463 - -0.7
1,943,475 - -0.5
1,943,493 + +0.1
1,943,497 - -0.5
1,943,506 + +0.0
1,943,511 + -0.3
1,943,545 + +0.4
1,943,568 + +0.0
1,943,591 - -0.1
1,943,598 + +0.6
1,943,618 + +0.0
1,943,619 + -0.1
1,943,619 + -0.8
1,943,619 + +0.7
1,943,619 + -0.8
1,943,619 + +0.1
1,943,619 + +0.4
1,943,619 + -2.1
1,943,624 + -1.4
1,943,626 - -0.5
1,943,627 - +0.2
1,943,627 - -0.2
1,943,627 - -0.8
1,943,627 - +1.3
1,943,627 - -0.7
1,943,627 - -1.4
1,943,627 - -0.9
1,943,627 - -0.0
1,943,627 - -0.2
1,943,632 - -0.2
1,943,633 - +0.9
1,943,655 + -0.2
1,943,655 + +0.6
1,943,655 + +1.2
1,943,655 + +0.8
1,943,655 + -0.3
1,943,655 + -0.2
1,943,655 + +0.5
1,943,655 + +0.1
1,943,663 - +0.6
1,943,663 - -0.7
1,943,663 - -0.2
1,943,663 - +0.2
1,943,681 + -0.0
1,943,689 - -0.0
1,943,689 - -1.6
1,943,700 + -0.4
1,943,700 + +0.0
1,943,700 + +0.3
1,943,700 + +0.5
1,943,708 - +0.2
1,943,708 - +0.2
1,943,708 - -0.5
1,943,710 + -0.1
1,943,710 + -1.1
1,943,710 + +0.3
1,943,718 - -0.3
1,943,718 - +0.0
1,943,718 - +0.6
1,943,718 - -0.7
1,943,718 - +0.6
1,943,718 - +0.7
1,943,718 - -0.5
1,943,744 + +0.8
1,943,797 - -0.5
1,943,833 + -1.1
1,943,833 + -0.6
1,943,833 + -0.7
1,943,836 + +0.4
1,943,836 + +1.9
1,943,836 - -1.2
1,943,841 - +0.2
1,943,842 + -0.1
1,943,887 + -0.4
1,943,887 + +0.1
1,943,887 + -0.1
1,943,887 + +0.4
1,943,887 + -0.0
1,943,887 + -1.5
1,943,890 + +0.2
1,943,890 + -0.9
1,943,895 - -0.3
1,943,895 - +0.6
1,943,895 - +0.3
1,943,895 - +0.7
1,943,895 - -0.5
1,943,898 - +0.1
1,943,898 - +0.3
1,943,898 - +0.5
1,943,898 - +0.5
1,943,898 - +0.5
1,943,898 - +0.1
1,943,898 - -0.5
1,943,899 + +0.3
1,943,900 + -0.3
1,943,900 + +0.3
1,943,900 + -1.2
1,943,900 + -1.5
1,943,900 + -0.7
1,943,900 + +0.3
1,943,900 + +0.2
1,943,900 + -1.4
1,943,900 + -0.1
1,943,906 + -0.1
1,943,908 - +0.5
1,943,908 - +0.9
1,943,908 - -0.5
1,943,908 - -0.0
1,943,908 - -0.7
1,943,908 - -0.2
1,943,908 - +0.1
1,943,908 - +0.2
1,943,910 + +0.2
1,943,914 - -0.1
1,943,915 + -0.4
1,943,923 - +0.8
1,943,923 - -0.0
1,943,923 - +0.5
1,943,925 + -0.1
1,943,925 + +0.7
1,943,925 + +0.1
1,943,925 + -1.1
1,943,925 + -0.3
1,943,925 + -0.6
1,943,925 + -0.6
1,943,925 + -1.5
1,943,925 + -0.8
1,943,925 + -0.5
1,943,933 - -1.0
1,943,933 - -0.2
1,943,933 - +0.6
1,943,933 - +0.6
1,943,933 - +0.2
1,943,965 - -0.1
1,943,978 - -0.0
1,943,978 - -0.2
1,943,978 - -0.1
1,944,022 - PGA1_c18730 0.11 -1.2
1,944,044 + PGA1_c18730 0.13 -0.1
1,944,044 + PGA1_c18730 0.13 -0.7
1,944,052 - PGA1_c18730 0.14 +0.5
1,944,080 + PGA1_c18730 0.17 -0.6
1,944,081 + PGA1_c18730 0.17 -0.2
1,944,088 - PGA1_c18730 0.18 -0.5
1,944,088 - PGA1_c18730 0.18 +0.6
1,944,090 + PGA1_c18730 0.18 -0.9
1,944,095 + PGA1_c18730 0.18 +1.2
1,944,113 + PGA1_c18730 0.20 +0.8
1,944,118 + PGA1_c18730 0.20 -0.1
1,944,121 - PGA1_c18730 0.21 -0.7
1,944,126 - PGA1_c18730 0.21 +0.5
1,944,131 - PGA1_c18730 0.22 +0.8
1,944,165 - PGA1_c18730 0.25 -0.0
1,944,197 + PGA1_c18730 0.28 +0.3
1,944,205 - PGA1_c18730 0.29 -0.2
1,944,205 - PGA1_c18730 0.29 +1.1
1,944,265 + PGA1_c18730 0.35 -1.0
1,944,266 + PGA1_c18730 0.35 +0.5
1,944,266 - PGA1_c18730 0.35 -0.1
1,944,295 + PGA1_c18730 0.38 +0.8
1,944,302 + PGA1_c18730 0.38 +1.1
1,944,302 + PGA1_c18730 0.38 +0.9
1,944,365 - PGA1_c18730 0.45 -0.3
1,944,373 - PGA1_c18730 0.45 -0.2

Or see this region's nucleotide sequence