Strain Fitness in Marinobacter adhaerens HP15 around HP15_1789

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1785 and HP15_1786 are separated by 2 nucleotidesHP15_1786 and HP15_1787 are separated by 77 nucleotidesHP15_1787 and HP15_1788 are separated by 3 nucleotidesHP15_1788 and HP15_1789 overlap by 14 nucleotidesHP15_1789 and HP15_1790 are separated by 41 nucleotides HP15_1785: HP15_1785 - DsrE family protein, at 1,879,154 to 1,879,558 _1785 HP15_1786: HP15_1786 - DsrE family protein, at 1,879,561 to 1,879,911 _1786 HP15_1787: HP15_1787 - sulfur relay, TusB/DsrH-like protein, at 1,879,989 to 1,880,201 _1787 HP15_1788: HP15_1788 - DsrC-like protein, at 1,880,205 to 1,880,531 _1788 HP15_1789: HP15_1789 - conserved hypothetical protein, at 1,880,518 to 1,880,886 _1789 HP15_1790: HP15_1790 - conserved hypothetical protein, membrane, at 1,880,928 to 1,882,094 _1790 Position (kb) 1880 1881Strain fitness (log2 ratio) -2 -1 0 1at 1880.577 kb on + strand, within HP15_1789at 1880.609 kb on + strand, within HP15_1789at 1880.736 kb on - strand, within HP15_1789at 1880.764 kb on - strand, within HP15_1789at 1880.895 kb on + strandat 1880.896 kb on + strandat 1880.896 kb on - strandat 1881.216 kb on - strand, within HP15_1790at 1881.227 kb on + strand, within HP15_1790at 1881.285 kb on + strand, within HP15_1790at 1881.363 kb on + strand, within HP15_1790at 1881.364 kb on + strand, within HP15_1790at 1881.372 kb on - strand, within HP15_1790at 1881.405 kb on + strand, within HP15_1790at 1881.433 kb on - strand, within HP15_1790at 1881.451 kb on + strand, within HP15_1790at 1881.564 kb on - strand, within HP15_1790at 1881.606 kb on - strand, within HP15_1790at 1881.679 kb on + strand, within HP15_1790at 1881.731 kb on + strand, within HP15_1790at 1881.731 kb on + strand, within HP15_1790at 1881.744 kb on + strand, within HP15_1790at 1881.752 kb on + strand, within HP15_1790

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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1,880,577 + HP15_1789 0.16 -1.9
1,880,609 + HP15_1789 0.25 -0.4
1,880,736 - HP15_1789 0.59 -0.9
1,880,764 - HP15_1789 0.67 -0.2
1,880,895 + +0.1
1,880,896 + -0.6
1,880,896 - +0.3
1,881,216 - HP15_1790 0.25 +1.3
1,881,227 + HP15_1790 0.26 -0.8
1,881,285 + HP15_1790 0.31 -0.9
1,881,363 + HP15_1790 0.37 -0.1
1,881,364 + HP15_1790 0.37 +0.1
1,881,372 - HP15_1790 0.38 -0.3
1,881,405 + HP15_1790 0.41 -0.4
1,881,433 - HP15_1790 0.43 +0.1
1,881,451 + HP15_1790 0.45 +0.2
1,881,564 - HP15_1790 0.54 -0.3
1,881,606 - HP15_1790 0.58 -0.3
1,881,679 + HP15_1790 0.64 +0.6
1,881,731 + HP15_1790 0.69 -0.3
1,881,731 + HP15_1790 0.69 +0.2
1,881,744 + HP15_1790 0.70 +0.4
1,881,752 + HP15_1790 0.71 -1.0

Or see this region's nucleotide sequence