Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17760

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17740 and PGA1_c17750 are separated by 15 nucleotidesPGA1_c17750 and PGA1_c17760 overlap by 8 nucleotidesPGA1_c17760 and PGA1_c17770 overlap by 4 nucleotidesPGA1_c17770 and PGA1_c17780 are separated by 13 nucleotidesPGA1_c17780 and PGA1_c17790 are separated by 101 nucleotides PGA1_c17740: PGA1_c17740 - putative gene transfer agent protein, at 1,858,849 to 1,859,481 _c17740 PGA1_c17750: PGA1_c17750 - putative gene transfer agent tail tape measure protein, at 1,859,497 to 1,860,153 _c17750 PGA1_c17760: PGA1_c17760 - gene transfer agent (GTA) protein, at 1,860,146 to 1,860,403 _c17760 PGA1_c17770: PGA1_c17770 - Protein of unknown function (DUF3356)., at 1,860,400 to 1,860,804 _c17770 PGA1_c17780: PGA1_c17780 - putative gene transfer agent major tail protein, at 1,860,818 to 1,861,231 _c17780 PGA1_c17790: PGA1_c17790 - putative gene transfer agent protein, at 1,861,333 to 1,861,740 _c17790 Position (kb) 1860 1861Strain fitness (log2 ratio) -1 0 1at 1859.258 kb on + strand, within PGA1_c17740at 1859.263 kb on + strand, within PGA1_c17740at 1859.310 kb on + strand, within PGA1_c17740at 1859.334 kb on - strand, within PGA1_c17740at 1859.334 kb on - strand, within PGA1_c17740at 1859.371 kb on + strand, within PGA1_c17740at 1859.379 kb on + strand, within PGA1_c17740at 1859.387 kb on - strand, within PGA1_c17740at 1859.530 kb on + strandat 1859.550 kb on + strandat 1859.550 kb on + strandat 1859.609 kb on - strand, within PGA1_c17750at 1859.609 kb on - strand, within PGA1_c17750at 1859.629 kb on - strand, within PGA1_c17750at 1859.676 kb on + strand, within PGA1_c17750at 1859.684 kb on - strand, within PGA1_c17750at 1859.684 kb on - strand, within PGA1_c17750at 1859.684 kb on - strand, within PGA1_c17750at 1859.695 kb on - strand, within PGA1_c17750at 1859.821 kb on - strand, within PGA1_c17750at 1859.878 kb on - strand, within PGA1_c17750at 1859.917 kb on + strand, within PGA1_c17750at 1859.918 kb on - strand, within PGA1_c17750at 1859.930 kb on + strand, within PGA1_c17750at 1859.930 kb on + strand, within PGA1_c17750at 1859.989 kb on - strand, within PGA1_c17750at 1859.995 kb on + strand, within PGA1_c17750at 1860.062 kb on - strand, within PGA1_c17750at 1860.141 kb on - strandat 1860.226 kb on - strand, within PGA1_c17760at 1860.254 kb on + strand, within PGA1_c17760at 1860.254 kb on + strand, within PGA1_c17760at 1860.280 kb on + strand, within PGA1_c17760at 1860.280 kb on + strand, within PGA1_c17760at 1860.285 kb on - strand, within PGA1_c17760at 1860.322 kb on + strand, within PGA1_c17760at 1860.364 kb on - strand, within PGA1_c17760at 1860.467 kb on - strand, within PGA1_c17770at 1860.656 kb on + strandat 1860.679 kb on + strand, within PGA1_c17770at 1860.760 kb on - strand, within PGA1_c17770at 1860.789 kb on + strandat 1860.797 kb on - strandat 1860.797 kb on - strandat 1860.797 kb on - strandat 1860.870 kb on - strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1860.913 kb on + strand, within PGA1_c17780at 1861.011 kb on - strand, within PGA1_c17780at 1861.011 kb on - strand, within PGA1_c17780at 1861.040 kb on + strand, within PGA1_c17780at 1861.057 kb on + strand, within PGA1_c17780at 1861.065 kb on - strand, within PGA1_c17780at 1861.075 kb on + strand, within PGA1_c17780at 1861.114 kb on - strand, within PGA1_c17780at 1861.161 kb on - strand, within PGA1_c17780at 1861.280 kb on + strandat 1861.280 kb on + strandat 1861.283 kb on - strandat 1861.315 kb on + strandat 1861.398 kb on - strand, within PGA1_c17790

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,859,258 + PGA1_c17740 0.65 +0.3
1,859,263 + PGA1_c17740 0.65 +0.7
1,859,310 + PGA1_c17740 0.73 +0.2
1,859,334 - PGA1_c17740 0.77 +0.0
1,859,334 - PGA1_c17740 0.77 -0.4
1,859,371 + PGA1_c17740 0.82 -0.1
1,859,379 + PGA1_c17740 0.84 -0.8
1,859,387 - PGA1_c17740 0.85 -0.2
1,859,530 + -0.3
1,859,550 + -0.7
1,859,550 + -0.1
1,859,609 - PGA1_c17750 0.17 -0.0
1,859,609 - PGA1_c17750 0.17 +0.6
1,859,629 - PGA1_c17750 0.20 -1.5
1,859,676 + PGA1_c17750 0.27 +1.0
1,859,684 - PGA1_c17750 0.28 -0.4
1,859,684 - PGA1_c17750 0.28 +1.1
1,859,684 - PGA1_c17750 0.28 +0.9
1,859,695 - PGA1_c17750 0.30 -0.1
1,859,821 - PGA1_c17750 0.49 -0.0
1,859,878 - PGA1_c17750 0.58 -0.5
1,859,917 + PGA1_c17750 0.64 +0.4
1,859,918 - PGA1_c17750 0.64 -0.5
1,859,930 + PGA1_c17750 0.66 +0.6
1,859,930 + PGA1_c17750 0.66 +0.1
1,859,989 - PGA1_c17750 0.75 -0.6
1,859,995 + PGA1_c17750 0.76 -1.5
1,860,062 - PGA1_c17750 0.86 -0.2
1,860,141 - +0.5
1,860,226 - PGA1_c17760 0.31 -0.4
1,860,254 + PGA1_c17760 0.42 +0.3
1,860,254 + PGA1_c17760 0.42 -0.0
1,860,280 + PGA1_c17760 0.52 +0.6
1,860,280 + PGA1_c17760 0.52 +1.1
1,860,285 - PGA1_c17760 0.54 +0.1
1,860,322 + PGA1_c17760 0.68 +0.8
1,860,364 - PGA1_c17760 0.84 +0.2
1,860,467 - PGA1_c17770 0.17 -0.1
1,860,656 + +1.7
1,860,679 + PGA1_c17770 0.69 -0.6
1,860,760 - PGA1_c17770 0.89 -0.2
1,860,789 + -0.2
1,860,797 - -0.2
1,860,797 - +0.1
1,860,797 - -0.6
1,860,870 - PGA1_c17780 0.13 -0.2
1,860,913 + PGA1_c17780 0.23 +1.1
1,860,913 + PGA1_c17780 0.23 +0.9
1,860,913 + PGA1_c17780 0.23 +0.2
1,861,011 - PGA1_c17780 0.47 +0.3
1,861,011 - PGA1_c17780 0.47 +0.0
1,861,040 + PGA1_c17780 0.54 -0.0
1,861,057 + PGA1_c17780 0.58 +0.1
1,861,065 - PGA1_c17780 0.60 -0.6
1,861,075 + PGA1_c17780 0.62 -0.6
1,861,114 - PGA1_c17780 0.71 -0.4
1,861,161 - PGA1_c17780 0.83 -0.4
1,861,280 + -0.4
1,861,280 + +0.3
1,861,283 - +1.0
1,861,315 + +0.5
1,861,398 - PGA1_c17790 0.16 -0.2

Or see this region's nucleotide sequence