Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17440

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17430 and PGA1_c17440 are separated by 100 nucleotidesPGA1_c17440 and PGA1_c17450 are separated by 141 nucleotides PGA1_c17430: PGA1_c17430 - hypothetical protein, at 1,824,086 to 1,827,802 _c17430 PGA1_c17440: PGA1_c17440 - putative peroxiredoxin Bcp, at 1,827,903 to 1,828,364 _c17440 PGA1_c17450: PGA1_c17450 - Uncharacterized protein conserved in bacteria, at 1,828,506 to 1,829,387 _c17450 Position (kb) 1827 1828 1829Strain fitness (log2 ratio) -3 -2 -1 0 1at 1826.908 kb on + strand, within PGA1_c17430at 1826.932 kb on + strand, within PGA1_c17430at 1826.951 kb on - strand, within PGA1_c17430at 1827.415 kb on + strand, within PGA1_c17430at 1827.423 kb on - strand, within PGA1_c17430at 1827.480 kb on + strandat 1827.525 kb on + strandat 1827.759 kb on + strandat 1827.819 kb on + strandat 1827.827 kb on - strandat 1827.911 kb on - strandat 1827.912 kb on + strandat 1827.912 kb on + strandat 1827.914 kb on + strandat 1827.920 kb on - strandat 1827.921 kb on - strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.931 kb on + strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.939 kb on - strandat 1827.967 kb on + strand, within PGA1_c17440at 1827.967 kb on + strand, within PGA1_c17440at 1827.975 kb on - strand, within PGA1_c17440at 1827.990 kb on + strand, within PGA1_c17440at 1828.012 kb on + strand, within PGA1_c17440at 1828.033 kb on + strand, within PGA1_c17440at 1828.106 kb on + strand, within PGA1_c17440at 1828.156 kb on - strand, within PGA1_c17440at 1828.293 kb on + strand, within PGA1_c17440at 1828.310 kb on + strand, within PGA1_c17440at 1828.338 kb on + strandat 1828.385 kb on + strandat 1828.461 kb on + strandat 1828.461 kb on + strandat 1828.482 kb on - strandat 1828.529 kb on - strandat 1828.548 kb on - strandat 1828.566 kb on - strandat 1828.581 kb on + strandat 1828.586 kb on + strandat 1828.594 kb on - strandat 1828.625 kb on + strand, within PGA1_c17450at 1828.780 kb on + strand, within PGA1_c17450at 1828.791 kb on + strand, within PGA1_c17450at 1828.809 kb on - strand, within PGA1_c17450at 1829.077 kb on + strand, within PGA1_c17450at 1829.125 kb on - strand, within PGA1_c17450at 1829.153 kb on + strand, within PGA1_c17450at 1829.158 kb on + strand, within PGA1_c17450at 1829.161 kb on - strand, within PGA1_c17450at 1829.168 kb on + strand, within PGA1_c17450at 1829.331 kb on + strandat 1829.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,826,908 + PGA1_c17430 0.76 -2.3
1,826,932 + PGA1_c17430 0.77 -0.7
1,826,951 - PGA1_c17430 0.77 -1.0
1,827,415 + PGA1_c17430 0.90 -0.6
1,827,423 - PGA1_c17430 0.90 -0.5
1,827,480 + -0.4
1,827,525 + -1.2
1,827,759 + +0.4
1,827,819 + -0.1
1,827,827 - +0.9
1,827,911 - -1.6
1,827,912 + +0.3
1,827,912 + +0.4
1,827,914 + -0.1
1,827,920 - -2.9
1,827,921 - -0.2
1,827,931 + -0.2
1,827,931 + -1.2
1,827,931 + -0.1
1,827,931 + -0.5
1,827,931 + +0.8
1,827,931 + -0.3
1,827,931 + -0.1
1,827,931 + +0.8
1,827,931 + -0.4
1,827,931 + -0.2
1,827,939 - -0.9
1,827,939 - -0.6
1,827,939 - -1.5
1,827,939 - -0.8
1,827,939 - -0.7
1,827,939 - -0.2
1,827,939 - -0.2
1,827,939 - -1.0
1,827,939 - -0.3
1,827,939 - +0.1
1,827,939 - -0.8
1,827,939 - -0.5
1,827,939 - -0.7
1,827,939 - +0.7
1,827,939 - +1.0
1,827,939 - -1.9
1,827,939 - -0.8
1,827,939 - +0.3
1,827,939 - -0.4
1,827,939 - -0.9
1,827,939 - -0.6
1,827,939 - -0.2
1,827,939 - +0.8
1,827,939 - -0.6
1,827,967 + PGA1_c17440 0.14 +0.6
1,827,967 + PGA1_c17440 0.14 -0.1
1,827,975 - PGA1_c17440 0.16 +0.1
1,827,990 + PGA1_c17440 0.19 +1.1
1,828,012 + PGA1_c17440 0.24 +0.1
1,828,033 + PGA1_c17440 0.28 +0.0
1,828,106 + PGA1_c17440 0.44 +0.1
1,828,156 - PGA1_c17440 0.55 -0.6
1,828,293 + PGA1_c17440 0.84 +0.6
1,828,310 + PGA1_c17440 0.88 +0.6
1,828,338 + -0.2
1,828,385 + -0.2
1,828,461 + +0.6
1,828,461 + -2.0
1,828,482 - +0.4
1,828,529 - +0.5
1,828,548 - +0.4
1,828,566 - -0.6
1,828,581 + +0.1
1,828,586 + +1.0
1,828,594 - -0.4
1,828,625 + PGA1_c17450 0.13 -0.4
1,828,780 + PGA1_c17450 0.31 +0.5
1,828,791 + PGA1_c17450 0.32 -0.0
1,828,809 - PGA1_c17450 0.34 +0.5
1,829,077 + PGA1_c17450 0.65 +1.0
1,829,125 - PGA1_c17450 0.70 +0.2
1,829,153 + PGA1_c17450 0.73 -0.2
1,829,158 + PGA1_c17450 0.74 -0.1
1,829,161 - PGA1_c17450 0.74 +0.3
1,829,168 + PGA1_c17450 0.75 -0.3
1,829,331 + +0.9
1,829,339 - +0.2

Or see this region's nucleotide sequence