Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16360

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16340 and PGA1_c16350 are separated by 2 nucleotidesPGA1_c16350 and PGA1_c16360 are separated by 51 nucleotidesPGA1_c16360 and PGA1_c16370 are separated by 94 nucleotides PGA1_c16340: PGA1_c16340 - Predicted membrane protein, at 1,696,330 to 1,696,908 _c16340 PGA1_c16350: PGA1_c16350 - Disulfide bond formation protein DsbB, at 1,696,911 to 1,697,381 _c16350 PGA1_c16360: PGA1_c16360 - putative transriptional regulator, AsnC family, at 1,697,433 to 1,697,870 _c16360 PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897 _c16370 Position (kb) 1697 1698Strain fitness (log2 ratio) -3 -2 -1 0 1at 1696.489 kb on - strand, within PGA1_c16340at 1696.520 kb on - strand, within PGA1_c16340at 1696.665 kb on - strand, within PGA1_c16340at 1696.679 kb on - strand, within PGA1_c16340at 1696.679 kb on - strand, within PGA1_c16340at 1696.838 kb on + strand, within PGA1_c16340at 1696.849 kb on + strand, within PGA1_c16340at 1696.900 kb on - strandat 1697.231 kb on + strand, within PGA1_c16350at 1697.344 kb on - strandat 1697.415 kb on + strandat 1697.423 kb on - strandat 1697.423 kb on - strandat 1697.423 kb on - strandat 1697.423 kb on - strandat 1697.426 kb on + strandat 1697.594 kb on + strand, within PGA1_c16360at 1697.604 kb on + strand, within PGA1_c16360at 1697.605 kb on + strand, within PGA1_c16360at 1697.697 kb on - strand, within PGA1_c16360at 1697.764 kb on - strand, within PGA1_c16360at 1697.787 kb on + strand, within PGA1_c16360at 1697.950 kb on - strandat 1697.959 kb on + strandat 1697.967 kb on - strandat 1697.977 kb on + strandat 1698.029 kb on + strandat 1698.103 kb on - strand, within PGA1_c16370at 1698.157 kb on + strand, within PGA1_c16370at 1698.165 kb on - strand, within PGA1_c16370at 1698.373 kb on + strand, within PGA1_c16370at 1698.406 kb on - strand, within PGA1_c16370at 1698.526 kb on + strand, within PGA1_c16370at 1698.532 kb on - strand, within PGA1_c16370at 1698.556 kb on - strand, within PGA1_c16370at 1698.556 kb on - strand, within PGA1_c16370at 1698.683 kb on - strand, within PGA1_c16370at 1698.725 kb on + strand, within PGA1_c16370at 1698.735 kb on - strand, within PGA1_c16370at 1698.845 kb on + strandat 1698.850 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,696,489 - PGA1_c16340 0.27 -3.0
1,696,520 - PGA1_c16340 0.33 +0.2
1,696,665 - PGA1_c16340 0.58 -2.9
1,696,679 - PGA1_c16340 0.60 -1.3
1,696,679 - PGA1_c16340 0.60 -0.5
1,696,838 + PGA1_c16340 0.88 -0.2
1,696,849 + PGA1_c16340 0.90 -0.7
1,696,900 - +0.8
1,697,231 + PGA1_c16350 0.68 -0.6
1,697,344 - -1.3
1,697,415 + -0.6
1,697,423 - -1.7
1,697,423 - -0.6
1,697,423 - -0.2
1,697,423 - +0.1
1,697,426 + +0.0
1,697,594 + PGA1_c16360 0.37 +1.0
1,697,604 + PGA1_c16360 0.39 -0.3
1,697,605 + PGA1_c16360 0.39 +0.7
1,697,697 - PGA1_c16360 0.60 +0.9
1,697,764 - PGA1_c16360 0.76 +0.2
1,697,787 + PGA1_c16360 0.81 -0.2
1,697,950 - -1.0
1,697,959 + +0.3
1,697,967 - -0.2
1,697,977 + -0.3
1,698,029 + +0.9
1,698,103 - PGA1_c16370 0.15 +0.5
1,698,157 + PGA1_c16370 0.21 -0.8
1,698,165 - PGA1_c16370 0.21 +1.4
1,698,373 + PGA1_c16370 0.44 -0.1
1,698,406 - PGA1_c16370 0.47 -0.6
1,698,526 + PGA1_c16370 0.60 +0.3
1,698,532 - PGA1_c16370 0.61 +0.4
1,698,556 - PGA1_c16370 0.63 -1.0
1,698,556 - PGA1_c16370 0.63 +1.3
1,698,683 - PGA1_c16370 0.77 -0.6
1,698,725 + PGA1_c16370 0.81 +0.5
1,698,735 - PGA1_c16370 0.83 +1.7
1,698,845 + +0.2
1,698,850 + -0.2

Or see this region's nucleotide sequence