Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16340 and PGA1_c16350 are separated by 2 nucleotides PGA1_c16350 and PGA1_c16360 are separated by 51 nucleotides PGA1_c16360 and PGA1_c16370 are separated by 94 nucleotides
PGA1_c16340: PGA1_c16340 - Predicted membrane protein, at 1,696,330 to 1,696,908
_c16340
PGA1_c16350: PGA1_c16350 - Disulfide bond formation protein DsbB, at 1,696,911 to 1,697,381
_c16350
PGA1_c16360: PGA1_c16360 - putative transriptional regulator, AsnC family, at 1,697,433 to 1,697,870
_c16360
PGA1_c16370: PGA1_c16370 - arginase ArcA, at 1,697,965 to 1,698,897
_c16370
Position (kb)
1697
1698 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1696.489 kb on - strand, within PGA1_c16340 at 1696.520 kb on - strand, within PGA1_c16340 at 1696.665 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.679 kb on - strand, within PGA1_c16340 at 1696.838 kb on + strand, within PGA1_c16340 at 1696.849 kb on + strand, within PGA1_c16340 at 1696.900 kb on - strand at 1697.231 kb on + strand, within PGA1_c16350 at 1697.344 kb on - strand at 1697.415 kb on + strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.423 kb on - strand at 1697.426 kb on + strand at 1697.594 kb on + strand, within PGA1_c16360 at 1697.604 kb on + strand, within PGA1_c16360 at 1697.605 kb on + strand, within PGA1_c16360 at 1697.697 kb on - strand, within PGA1_c16360 at 1697.764 kb on - strand, within PGA1_c16360 at 1697.787 kb on + strand, within PGA1_c16360 at 1697.950 kb on - strand at 1697.959 kb on + strand at 1697.967 kb on - strand at 1697.977 kb on + strand at 1698.029 kb on + strand at 1698.103 kb on - strand, within PGA1_c16370 at 1698.157 kb on + strand, within PGA1_c16370 at 1698.165 kb on - strand, within PGA1_c16370 at 1698.373 kb on + strand, within PGA1_c16370 at 1698.406 kb on - strand, within PGA1_c16370 at 1698.526 kb on + strand, within PGA1_c16370 at 1698.532 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.556 kb on - strand, within PGA1_c16370 at 1698.683 kb on - strand, within PGA1_c16370 at 1698.725 kb on + strand, within PGA1_c16370 at 1698.735 kb on - strand, within PGA1_c16370 at 1698.845 kb on + strand at 1698.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,696,489 - PGA1_c16340 0.27 -3.0 1,696,520 - PGA1_c16340 0.33 +0.2 1,696,665 - PGA1_c16340 0.58 -2.9 1,696,679 - PGA1_c16340 0.60 -1.3 1,696,679 - PGA1_c16340 0.60 -0.5 1,696,838 + PGA1_c16340 0.88 -0.2 1,696,849 + PGA1_c16340 0.90 -0.7 1,696,900 - +0.8 1,697,231 + PGA1_c16350 0.68 -0.6 1,697,344 - -1.3 1,697,415 + -0.6 1,697,423 - -1.7 1,697,423 - -0.6 1,697,423 - -0.2 1,697,423 - +0.1 1,697,426 + +0.0 1,697,594 + PGA1_c16360 0.37 +1.0 1,697,604 + PGA1_c16360 0.39 -0.3 1,697,605 + PGA1_c16360 0.39 +0.7 1,697,697 - PGA1_c16360 0.60 +0.9 1,697,764 - PGA1_c16360 0.76 +0.2 1,697,787 + PGA1_c16360 0.81 -0.2 1,697,950 - -1.0 1,697,959 + +0.3 1,697,967 - -0.2 1,697,977 + -0.3 1,698,029 + +0.9 1,698,103 - PGA1_c16370 0.15 +0.5 1,698,157 + PGA1_c16370 0.21 -0.8 1,698,165 - PGA1_c16370 0.21 +1.4 1,698,373 + PGA1_c16370 0.44 -0.1 1,698,406 - PGA1_c16370 0.47 -0.6 1,698,526 + PGA1_c16370 0.60 +0.3 1,698,532 - PGA1_c16370 0.61 +0.4 1,698,556 - PGA1_c16370 0.63 -1.0 1,698,556 - PGA1_c16370 0.63 +1.3 1,698,683 - PGA1_c16370 0.77 -0.6 1,698,725 + PGA1_c16370 0.81 +0.5 1,698,735 - PGA1_c16370 0.83 +1.7 1,698,845 + +0.2 1,698,850 + -0.2
Or see this region's nucleotide sequence