Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16230

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16220 and PGA1_c16230 are separated by 10 nucleotidesPGA1_c16230 and PGA1_c16240 are separated by 87 nucleotides PGA1_c16220: PGA1_c16220 - molybdopterin binding domain-containing protein, at 1,683,198 to 1,685,468 _c16220 PGA1_c16230: PGA1_c16230 - ThiS family., at 1,685,479 to 1,685,769 _c16230 PGA1_c16240: PGA1_c16240 - methylthioribose-1-phosphate isomerase MtnA, at 1,685,857 to 1,686,960 _c16240 Position (kb) 1685 1686Strain fitness (log2 ratio) -1 0 1 2at 1684.501 kb on + strand, within PGA1_c16220at 1684.507 kb on - strand, within PGA1_c16220at 1684.507 kb on - strand, within PGA1_c16220at 1684.606 kb on - strand, within PGA1_c16220at 1684.689 kb on + strand, within PGA1_c16220at 1684.756 kb on + strand, within PGA1_c16220at 1684.775 kb on - strand, within PGA1_c16220at 1684.887 kb on + strand, within PGA1_c16220at 1684.915 kb on + strand, within PGA1_c16220at 1684.923 kb on - strand, within PGA1_c16220at 1684.964 kb on - strand, within PGA1_c16220at 1684.964 kb on - strand, within PGA1_c16220at 1685.044 kb on + strand, within PGA1_c16220at 1685.088 kb on + strand, within PGA1_c16220at 1685.123 kb on - strand, within PGA1_c16220at 1685.128 kb on - strand, within PGA1_c16220at 1685.146 kb on - strand, within PGA1_c16220at 1685.146 kb on - strand, within PGA1_c16220at 1685.146 kb on - strand, within PGA1_c16220at 1685.149 kb on + strand, within PGA1_c16220at 1685.149 kb on + strand, within PGA1_c16220at 1685.160 kb on + strand, within PGA1_c16220at 1685.199 kb on + strand, within PGA1_c16220at 1685.226 kb on + strand, within PGA1_c16220at 1685.244 kb on + strandat 1685.244 kb on + strandat 1685.259 kb on - strandat 1685.297 kb on - strandat 1685.299 kb on - strandat 1685.459 kb on + strandat 1685.464 kb on + strandat 1685.501 kb on - strandat 1685.501 kb on - strandat 1685.501 kb on - strandat 1685.503 kb on + strandat 1685.531 kb on + strand, within PGA1_c16230at 1685.581 kb on + strand, within PGA1_c16230at 1685.636 kb on + strand, within PGA1_c16230at 1685.665 kb on + strand, within PGA1_c16230at 1685.703 kb on - strand, within PGA1_c16230at 1685.704 kb on + strand, within PGA1_c16230at 1685.704 kb on + strand, within PGA1_c16230at 1685.781 kb on + strandat 1685.825 kb on + strandat 1685.883 kb on - strandat 1685.891 kb on + strandat 1685.891 kb on + strandat 1685.891 kb on + strandat 1685.919 kb on - strandat 1685.919 kb on - strandat 1686.058 kb on - strand, within PGA1_c16240at 1686.101 kb on + strand, within PGA1_c16240at 1686.109 kb on - strand, within PGA1_c16240at 1686.109 kb on - strand, within PGA1_c16240at 1686.111 kb on + strand, within PGA1_c16240at 1686.112 kb on - strand, within PGA1_c16240at 1686.186 kb on + strand, within PGA1_c16240at 1686.187 kb on - strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.190 kb on + strand, within PGA1_c16240at 1686.272 kb on + strand, within PGA1_c16240at 1686.445 kb on - strand, within PGA1_c16240at 1686.479 kb on + strand, within PGA1_c16240at 1686.508 kb on - strand, within PGA1_c16240at 1686.513 kb on - strand, within PGA1_c16240at 1686.558 kb on + strand, within PGA1_c16240at 1686.570 kb on - strand, within PGA1_c16240at 1686.581 kb on - strand, within PGA1_c16240at 1686.637 kb on - strand, within PGA1_c16240at 1686.638 kb on - strand, within PGA1_c16240at 1686.646 kb on + strand, within PGA1_c16240at 1686.659 kb on - strand, within PGA1_c16240at 1686.763 kb on - strand, within PGA1_c16240at 1686.765 kb on + strand, within PGA1_c16240at 1686.765 kb on + strand, within PGA1_c16240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,684,501 + PGA1_c16220 0.57 -0.8
1,684,507 - PGA1_c16220 0.58 -0.3
1,684,507 - PGA1_c16220 0.58 -0.3
1,684,606 - PGA1_c16220 0.62 -0.1
1,684,689 + PGA1_c16220 0.66 -0.6
1,684,756 + PGA1_c16220 0.69 -0.0
1,684,775 - PGA1_c16220 0.69 +0.3
1,684,887 + PGA1_c16220 0.74 +1.0
1,684,915 + PGA1_c16220 0.76 +0.8
1,684,923 - PGA1_c16220 0.76 +0.3
1,684,964 - PGA1_c16220 0.78 +0.7
1,684,964 - PGA1_c16220 0.78 +0.4
1,685,044 + PGA1_c16220 0.81 +0.2
1,685,088 + PGA1_c16220 0.83 +0.0
1,685,123 - PGA1_c16220 0.85 -0.1
1,685,128 - PGA1_c16220 0.85 -0.1
1,685,146 - PGA1_c16220 0.86 -1.4
1,685,146 - PGA1_c16220 0.86 +0.9
1,685,146 - PGA1_c16220 0.86 -0.3
1,685,149 + PGA1_c16220 0.86 -0.6
1,685,149 + PGA1_c16220 0.86 +0.1
1,685,160 + PGA1_c16220 0.86 -0.3
1,685,199 + PGA1_c16220 0.88 -0.6
1,685,226 + PGA1_c16220 0.89 -0.3
1,685,244 + -0.1
1,685,244 + +0.6
1,685,259 - +0.3
1,685,297 - +0.4
1,685,299 - +0.3
1,685,459 + +0.4
1,685,464 + -0.7
1,685,501 - -0.2
1,685,501 - -0.0
1,685,501 - +0.1
1,685,503 + -0.2
1,685,531 + PGA1_c16230 0.18 +0.3
1,685,581 + PGA1_c16230 0.35 +0.7
1,685,636 + PGA1_c16230 0.54 -0.1
1,685,665 + PGA1_c16230 0.64 +0.5
1,685,703 - PGA1_c16230 0.77 +0.6
1,685,704 + PGA1_c16230 0.77 +0.4
1,685,704 + PGA1_c16230 0.77 +0.0
1,685,781 + +1.0
1,685,825 + +0.0
1,685,883 - +0.2
1,685,891 + +1.0
1,685,891 + +0.7
1,685,891 + +0.2
1,685,919 - +0.3
1,685,919 - -0.1
1,686,058 - PGA1_c16240 0.18 -0.0
1,686,101 + PGA1_c16240 0.22 +0.0
1,686,109 - PGA1_c16240 0.23 +0.2
1,686,109 - PGA1_c16240 0.23 -0.1
1,686,111 + PGA1_c16240 0.23 -0.5
1,686,112 - PGA1_c16240 0.23 +0.6
1,686,186 + PGA1_c16240 0.30 -0.2
1,686,187 - PGA1_c16240 0.30 +0.8
1,686,190 + PGA1_c16240 0.30 +2.2
1,686,190 + PGA1_c16240 0.30 -0.2
1,686,190 + PGA1_c16240 0.30 +0.0
1,686,272 + PGA1_c16240 0.38 +0.2
1,686,445 - PGA1_c16240 0.53 -0.4
1,686,479 + PGA1_c16240 0.56 +0.8
1,686,508 - PGA1_c16240 0.59 -0.8
1,686,513 - PGA1_c16240 0.59 +1.6
1,686,558 + PGA1_c16240 0.63 -0.2
1,686,570 - PGA1_c16240 0.65 +0.1
1,686,581 - PGA1_c16240 0.66 -0.1
1,686,637 - PGA1_c16240 0.71 -0.4
1,686,638 - PGA1_c16240 0.71 -0.2
1,686,646 + PGA1_c16240 0.71 +0.6
1,686,659 - PGA1_c16240 0.73 -0.8
1,686,763 - PGA1_c16240 0.82 -0.7
1,686,765 + PGA1_c16240 0.82 +1.0
1,686,765 + PGA1_c16240 0.82 +0.9

Or see this region's nucleotide sequence