Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1530 and HP15_1531 are separated by 3 nucleotides HP15_1531 and HP15_1532 are separated by 284 nucleotides HP15_1532 and HP15_1533 are separated by 1 nucleotides
HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590
_1530
HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520
_1531
HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488
_1532
HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984
_1533
Position (kb)
1612
1613
1614 Strain fitness (log2 ratio)
-1
0
1 at 1611.643 kb on + strand at 1611.676 kb on - strand at 1611.853 kb on + strand, within HP15_1530 at 1611.853 kb on + strand, within HP15_1530 at 1611.911 kb on + strand, within HP15_1530 at 1612.092 kb on - strand, within HP15_1530 at 1612.587 kb on - strand at 1612.587 kb on - strand at 1612.624 kb on + strand at 1612.624 kb on + strand at 1612.630 kb on + strand at 1612.638 kb on - strand at 1612.678 kb on + strand at 1612.791 kb on + strand, within HP15_1531 at 1612.812 kb on + strand, within HP15_1531 at 1612.932 kb on + strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1612.966 kb on - strand, within HP15_1531 at 1613.205 kb on + strand, within HP15_1531 at 1613.247 kb on + strand, within HP15_1531 at 1613.264 kb on - strand, within HP15_1531 at 1613.266 kb on + strand, within HP15_1531 at 1613.357 kb on - strand, within HP15_1531 at 1613.707 kb on - strand at 1613.707 kb on - strand at 1613.717 kb on - strand at 1614.407 kb on + strand, within HP15_1532
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,611,643 + +0.3 1,611,676 - -0.7 1,611,853 + HP15_1530 0.25 -0.8 1,611,853 + HP15_1530 0.25 -0.5 1,611,911 + HP15_1530 0.31 -0.8 1,612,092 - HP15_1530 0.49 -0.6 1,612,587 - +0.3 1,612,587 - +0.5 1,612,624 + +0.1 1,612,624 + +0.5 1,612,630 + +0.1 1,612,638 - -0.4 1,612,678 + +0.2 1,612,791 + HP15_1531 0.21 -1.2 1,612,812 + HP15_1531 0.24 +0.4 1,612,932 + HP15_1531 0.36 +0.8 1,612,966 - HP15_1531 0.40 +0.0 1,612,966 - HP15_1531 0.40 +0.7 1,612,966 - HP15_1531 0.40 +0.1 1,613,205 + HP15_1531 0.66 -0.5 1,613,247 + HP15_1531 0.70 +0.4 1,613,264 - HP15_1531 0.72 +0.3 1,613,266 + HP15_1531 0.72 -0.8 1,613,357 - HP15_1531 0.82 +0.1 1,613,707 - -0.3 1,613,707 - -0.4 1,613,717 - -0.3 1,614,407 + HP15_1532 0.88 -0.5
Or see this region's nucleotide sequence