Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14060 and PGA1_c14070 are separated by 28 nucleotides PGA1_c14070 and PGA1_c14080 are separated by 37 nucleotides PGA1_c14080 and PGA1_c14090 are separated by 81 nucleotides PGA1_c14090 and PGA1_c14100 are separated by 13 nucleotides
PGA1_c14060: PGA1_c14060 - tyrosine recombinase XerD, at 1,457,474 to 1,458,487
_c14060
PGA1_c14070: PGA1_c14070 - hypothetical protein, at 1,458,516 to 1,460,189
_c14070
PGA1_c14080: PGA1_c14080 - hypothetical protein, at 1,460,227 to 1,460,376
_c14080
PGA1_c14090: PGA1_c14090 - shikimate kinase AroK, at 1,460,458 to 1,461,048
_c14090
PGA1_c14100: PGA1_c14100 - 3-dehydroquinate synthase AroB, at 1,461,062 to 1,462,189
_c14100
Position (kb)
1458
1459
1460
1461 Strain fitness (log2 ratio)
-2
-1
0
1 at 1457.520 kb on - strand at 1457.520 kb on - strand at 1457.629 kb on - strand, within PGA1_c14060 at 1457.692 kb on + strand, within PGA1_c14060 at 1457.700 kb on - strand, within PGA1_c14060 at 1457.928 kb on + strand, within PGA1_c14060 at 1457.936 kb on - strand, within PGA1_c14060 at 1458.015 kb on + strand, within PGA1_c14060 at 1458.120 kb on + strand, within PGA1_c14060 at 1458.140 kb on - strand, within PGA1_c14060 at 1458.150 kb on + strand, within PGA1_c14060 at 1458.212 kb on - strand, within PGA1_c14060 at 1458.248 kb on - strand, within PGA1_c14060 at 1458.259 kb on - strand, within PGA1_c14060 at 1458.482 kb on + strand at 1458.482 kb on + strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.710 kb on + strand, within PGA1_c14070 at 1458.768 kb on - strand, within PGA1_c14070 at 1458.781 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand at 1458.816 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.111 kb on + strand, within PGA1_c14070 at 1459.258 kb on + strand, within PGA1_c14070 at 1459.275 kb on + strand, within PGA1_c14070 at 1459.414 kb on + strand, within PGA1_c14070 at 1459.467 kb on - strand, within PGA1_c14070 at 1459.485 kb on + strand, within PGA1_c14070 at 1459.573 kb on + strand, within PGA1_c14070 at 1459.581 kb on - strand, within PGA1_c14070 at 1459.598 kb on + strand, within PGA1_c14070 at 1459.721 kb on - strand, within PGA1_c14070 at 1459.816 kb on + strand, within PGA1_c14070 at 1459.881 kb on + strand, within PGA1_c14070 at 1459.881 kb on + strand, within PGA1_c14070 at 1459.888 kb on - strand, within PGA1_c14070 at 1460.389 kb on - strand at 1461.039 kb on - strand at 1461.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,457,520 - -0.6 1,457,520 - +0.4 1,457,629 - PGA1_c14060 0.15 +0.4 1,457,692 + PGA1_c14060 0.21 -1.0 1,457,700 - PGA1_c14060 0.22 -0.0 1,457,928 + PGA1_c14060 0.45 -0.2 1,457,936 - PGA1_c14060 0.46 -0.3 1,458,015 + PGA1_c14060 0.53 +1.1 1,458,120 + PGA1_c14060 0.64 -1.0 1,458,140 - PGA1_c14060 0.66 -1.1 1,458,150 + PGA1_c14060 0.67 -0.3 1,458,212 - PGA1_c14060 0.73 -0.5 1,458,248 - PGA1_c14060 0.76 -0.3 1,458,259 - PGA1_c14060 0.77 -1.0 1,458,482 + -0.3 1,458,482 + +1.1 1,458,490 - -0.4 1,458,490 - -0.2 1,458,490 - +0.7 1,458,710 + PGA1_c14070 0.12 +0.8 1,458,768 - PGA1_c14070 0.15 +1.2 1,458,781 - PGA1_c14070 0.16 -0.6 1,458,789 - PGA1_c14070 0.16 +0.1 1,458,789 - -0.0 1,458,816 + PGA1_c14070 0.18 +0.6 1,459,105 + PGA1_c14070 0.35 +0.4 1,459,105 + PGA1_c14070 0.35 +1.1 1,459,111 + PGA1_c14070 0.36 -0.4 1,459,258 + PGA1_c14070 0.44 +0.8 1,459,275 + PGA1_c14070 0.45 -0.1 1,459,414 + PGA1_c14070 0.54 -0.9 1,459,467 - PGA1_c14070 0.57 +0.9 1,459,485 + PGA1_c14070 0.58 +0.1 1,459,573 + PGA1_c14070 0.63 +0.4 1,459,581 - PGA1_c14070 0.64 +0.1 1,459,598 + PGA1_c14070 0.65 +0.8 1,459,721 - PGA1_c14070 0.72 -0.3 1,459,816 + PGA1_c14070 0.78 +0.3 1,459,881 + PGA1_c14070 0.82 +0.1 1,459,881 + PGA1_c14070 0.82 -2.6 1,459,888 - PGA1_c14070 0.82 +0.6 1,460,389 - +0.2 1,461,039 - -1.6 1,461,065 - +0.2
Or see this region's nucleotide sequence