Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13070 and PGA1_c13080 are separated by 8 nucleotides PGA1_c13080 and PGA1_c13090 are separated by 101 nucleotides
PGA1_c13070: PGA1_c13070 - putative oxidoreductase, at 1,351,892 to 1,352,998
_c13070
PGA1_c13080: PGA1_c13080 - transcriptional regulator, GntR family, at 1,353,007 to 1,353,717
_c13080
PGA1_c13090: PGA1_c13090 - alkanesulfonate monooxygenase SsuD, at 1,353,819 to 1,354,973
_c13090
Position (kb)
1353
1354 Strain fitness (log2 ratio)
-2
-1
0
1 at 1352.091 kb on + strand, within PGA1_c13070 at 1352.116 kb on + strand, within PGA1_c13070 at 1352.124 kb on - strand, within PGA1_c13070 at 1352.136 kb on - strand, within PGA1_c13070 at 1352.150 kb on - strand, within PGA1_c13070 at 1352.168 kb on - strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.175 kb on + strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.183 kb on - strand, within PGA1_c13070 at 1352.250 kb on - strand, within PGA1_c13070 at 1352.278 kb on + strand, within PGA1_c13070 at 1352.279 kb on + strand, within PGA1_c13070 at 1352.286 kb on - strand, within PGA1_c13070 at 1352.336 kb on - strand, within PGA1_c13070 at 1352.347 kb on + strand, within PGA1_c13070 at 1352.399 kb on - strand, within PGA1_c13070 at 1352.421 kb on - strand, within PGA1_c13070 at 1352.456 kb on + strand, within PGA1_c13070 at 1352.615 kb on + strand, within PGA1_c13070 at 1352.654 kb on - strand, within PGA1_c13070 at 1352.664 kb on - strand, within PGA1_c13070 at 1352.675 kb on + strand, within PGA1_c13070 at 1352.818 kb on - strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.821 kb on + strand, within PGA1_c13070 at 1352.829 kb on - strand, within PGA1_c13070 at 1352.862 kb on + strand, within PGA1_c13070 at 1352.977 kb on + strand at 1352.989 kb on - strand at 1353.041 kb on - strand at 1353.076 kb on - strand at 1353.099 kb on - strand, within PGA1_c13080 at 1353.263 kb on - strand, within PGA1_c13080 at 1353.313 kb on + strand, within PGA1_c13080 at 1353.482 kb on - strand, within PGA1_c13080 at 1353.483 kb on - strand, within PGA1_c13080 at 1353.561 kb on + strand, within PGA1_c13080 at 1353.652 kb on + strand at 1353.652 kb on + strand at 1353.652 kb on + strand at 1353.667 kb on + strand at 1353.710 kb on - strand at 1353.795 kb on - strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.802 kb on + strand at 1353.810 kb on - strand at 1353.810 kb on - strand at 1353.810 kb on - strand at 1353.810 kb on - strand at 1353.810 kb on - strand at 1353.810 kb on - strand at 1353.823 kb on + strand at 1353.838 kb on + strand at 1353.949 kb on + strand, within PGA1_c13090 at 1353.957 kb on - strand, within PGA1_c13090 at 1354.003 kb on - strand, within PGA1_c13090 at 1354.079 kb on + strand, within PGA1_c13090 at 1354.242 kb on + strand, within PGA1_c13090 at 1354.250 kb on - strand, within PGA1_c13090 at 1354.263 kb on + strand, within PGA1_c13090 at 1354.329 kb on - strand, within PGA1_c13090 at 1354.402 kb on + strand, within PGA1_c13090 at 1354.405 kb on - strand, within PGA1_c13090 at 1354.405 kb on - strand, within PGA1_c13090 at 1354.435 kb on - strand, within PGA1_c13090 at 1354.473 kb on + strand, within PGA1_c13090 at 1354.480 kb on + strand, within PGA1_c13090 at 1354.508 kb on + strand, within PGA1_c13090 at 1354.516 kb on - strand, within PGA1_c13090 at 1354.604 kb on + strand, within PGA1_c13090 at 1354.612 kb on - strand, within PGA1_c13090 at 1354.612 kb on - strand, within PGA1_c13090 at 1354.612 kb on - strand, within PGA1_c13090 at 1354.612 kb on - strand, within PGA1_c13090 at 1354.612 kb on - strand, within PGA1_c13090 at 1354.651 kb on + strand, within PGA1_c13090 at 1354.709 kb on + strand, within PGA1_c13090 at 1354.717 kb on - strand, within PGA1_c13090 at 1354.717 kb on - strand, within PGA1_c13090 at 1354.717 kb on - strand, within PGA1_c13090 at 1354.717 kb on - strand, within PGA1_c13090 at 1354.717 kb on - strand, within PGA1_c13090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,352,091 + PGA1_c13070 0.18 +0.6 1,352,116 + PGA1_c13070 0.20 -0.2 1,352,124 - PGA1_c13070 0.21 +0.1 1,352,136 - PGA1_c13070 0.22 -0.1 1,352,150 - PGA1_c13070 0.23 -0.6 1,352,168 - PGA1_c13070 0.25 -0.1 1,352,175 + PGA1_c13070 0.26 -0.0 1,352,175 + PGA1_c13070 0.26 -0.2 1,352,175 + PGA1_c13070 0.26 +1.1 1,352,175 + PGA1_c13070 0.26 +0.1 1,352,175 + PGA1_c13070 0.26 +0.0 1,352,175 + PGA1_c13070 0.26 +0.1 1,352,183 - PGA1_c13070 0.26 -0.2 1,352,183 - PGA1_c13070 0.26 +0.2 1,352,183 - PGA1_c13070 0.26 -0.7 1,352,250 - PGA1_c13070 0.32 -0.2 1,352,278 + PGA1_c13070 0.35 -0.6 1,352,279 + PGA1_c13070 0.35 -0.7 1,352,286 - PGA1_c13070 0.36 +0.5 1,352,336 - PGA1_c13070 0.40 +1.0 1,352,347 + PGA1_c13070 0.41 -0.0 1,352,399 - PGA1_c13070 0.46 +0.3 1,352,421 - PGA1_c13070 0.48 -0.6 1,352,456 + PGA1_c13070 0.51 -0.7 1,352,615 + PGA1_c13070 0.65 -0.9 1,352,654 - PGA1_c13070 0.69 -0.0 1,352,664 - PGA1_c13070 0.70 -0.2 1,352,675 + PGA1_c13070 0.71 +0.7 1,352,818 - PGA1_c13070 0.84 +0.8 1,352,821 + PGA1_c13070 0.84 -0.2 1,352,821 + PGA1_c13070 0.84 +0.5 1,352,821 + PGA1_c13070 0.84 +0.4 1,352,821 + PGA1_c13070 0.84 +0.5 1,352,821 + PGA1_c13070 0.84 +1.0 1,352,821 + PGA1_c13070 0.84 -0.9 1,352,821 + PGA1_c13070 0.84 -0.9 1,352,829 - PGA1_c13070 0.85 -1.0 1,352,862 + PGA1_c13070 0.88 +0.0 1,352,977 + +0.6 1,352,989 - +0.4 1,353,041 - -2.0 1,353,076 - +0.0 1,353,099 - PGA1_c13080 0.13 +0.5 1,353,263 - PGA1_c13080 0.36 +0.6 1,353,313 + PGA1_c13080 0.43 +0.4 1,353,482 - PGA1_c13080 0.67 -0.8 1,353,483 - PGA1_c13080 0.67 +0.4 1,353,561 + PGA1_c13080 0.78 -0.6 1,353,652 + +0.7 1,353,652 + -0.6 1,353,652 + -0.1 1,353,667 + -0.8 1,353,710 - -0.1 1,353,795 - +0.8 1,353,802 + -1.1 1,353,802 + -0.2 1,353,802 + -0.1 1,353,802 + -1.0 1,353,802 + -0.4 1,353,802 + -0.1 1,353,802 + +0.0 1,353,802 + -0.7 1,353,810 - +0.0 1,353,810 - -1.1 1,353,810 - -0.2 1,353,810 - +0.1 1,353,810 - +0.4 1,353,810 - -0.2 1,353,823 + -0.5 1,353,838 + +0.1 1,353,949 + PGA1_c13090 0.11 +0.3 1,353,957 - PGA1_c13090 0.12 -0.7 1,354,003 - PGA1_c13090 0.16 +0.4 1,354,079 + PGA1_c13090 0.23 -0.1 1,354,242 + PGA1_c13090 0.37 -0.5 1,354,250 - PGA1_c13090 0.37 -1.9 1,354,263 + PGA1_c13090 0.38 -2.0 1,354,329 - PGA1_c13090 0.44 -0.3 1,354,402 + PGA1_c13090 0.50 +0.0 1,354,405 - PGA1_c13090 0.51 -0.8 1,354,405 - PGA1_c13090 0.51 +0.8 1,354,435 - PGA1_c13090 0.53 -0.7 1,354,473 + PGA1_c13090 0.57 -0.3 1,354,480 + PGA1_c13090 0.57 +0.1 1,354,508 + PGA1_c13090 0.60 -0.4 1,354,516 - PGA1_c13090 0.60 +0.4 1,354,604 + PGA1_c13090 0.68 +0.4 1,354,612 - PGA1_c13090 0.69 +0.9 1,354,612 - PGA1_c13090 0.69 -1.0 1,354,612 - PGA1_c13090 0.69 +0.8 1,354,612 - PGA1_c13090 0.69 +0.2 1,354,612 - PGA1_c13090 0.69 +0.9 1,354,651 + PGA1_c13090 0.72 +0.2 1,354,709 + PGA1_c13090 0.77 +0.6 1,354,717 - PGA1_c13090 0.78 -1.5 1,354,717 - PGA1_c13090 0.78 +0.3 1,354,717 - PGA1_c13090 0.78 -0.5 1,354,717 - PGA1_c13090 0.78 -0.1 1,354,717 - PGA1_c13090 0.78 -0.5
Or see this region's nucleotide sequence