Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12550

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c12530 and PGA1_c12540 are separated by 93 nucleotidesPGA1_c12540 and PGA1_c12550 are separated by 25 nucleotidesPGA1_c12550 and PGA1_c12560 are separated by 172 nucleotidesPGA1_c12560 and PGA1_c12570 are separated by 93 nucleotides PGA1_c12530: PGA1_c12530 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 1,301,345 to 1,302,613 _c12530 PGA1_c12540: PGA1_c12540 - Putative translation initiation inhibitor, yjgF family, at 1,302,707 to 1,303,066 _c12540 PGA1_c12550: PGA1_c12550 - hypothetical protein, at 1,303,092 to 1,303,379 _c12550 PGA1_c12560: PGA1_c12560 - putative NADH ubiquinone oxidoreductase subunit NDUFA12, at 1,303,552 to 1,303,938 _c12560 PGA1_c12570: PGA1_c12570 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 1,304,032 to 1,304,484 _c12570 Position (kb) 1303 1304Strain fitness (log2 ratio) -1 0 1at 1302.322 kb on + strand, within PGA1_c12530at 1302.337 kb on + strand, within PGA1_c12530at 1302.444 kb on + strand, within PGA1_c12530at 1302.543 kb on - strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.614 kb on + strandat 1302.621 kb on + strandat 1302.621 kb on + strandat 1302.622 kb on - strandat 1302.622 kb on - strandat 1302.622 kb on - strandat 1302.622 kb on - strandat 1302.622 kb on - strandat 1302.622 kb on - strandat 1302.709 kb on + strandat 1302.780 kb on + strand, within PGA1_c12540at 1302.793 kb on + strand, within PGA1_c12540at 1302.801 kb on + strand, within PGA1_c12540at 1302.801 kb on + strand, within PGA1_c12540at 1302.801 kb on + strand, within PGA1_c12540at 1302.801 kb on + strand, within PGA1_c12540at 1302.809 kb on - strand, within PGA1_c12540at 1302.821 kb on - strand, within PGA1_c12540at 1302.832 kb on + strand, within PGA1_c12540at 1302.832 kb on + strand, within PGA1_c12540at 1302.908 kb on + strand, within PGA1_c12540at 1302.966 kb on + strand, within PGA1_c12540at 1302.974 kb on - strand, within PGA1_c12540at 1303.069 kb on - strandat 1303.089 kb on - strandat 1303.184 kb on - strand, within PGA1_c12550at 1303.193 kb on + strand, within PGA1_c12550at 1303.239 kb on + strand, within PGA1_c12550at 1303.254 kb on - strand, within PGA1_c12550at 1303.343 kb on + strand, within PGA1_c12550at 1303.343 kb on + strand, within PGA1_c12550at 1303.480 kb on - strandat 1303.493 kb on - strandat 1303.957 kb on + strandat 1304.022 kb on - strandat 1304.045 kb on + strandat 1304.066 kb on + strandat 1304.168 kb on + strand, within PGA1_c12570at 1304.234 kb on + strand, within PGA1_c12570at 1304.242 kb on - strand, within PGA1_c12570at 1304.325 kb on - strand, within PGA1_c12570at 1304.335 kb on + strand, within PGA1_c12570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,302,322 + PGA1_c12530 0.77 -1.7
1,302,337 + PGA1_c12530 0.78 -0.3
1,302,444 + PGA1_c12530 0.87 -1.5
1,302,543 - -0.3
1,302,614 + -0.4
1,302,614 + -0.3
1,302,614 + -0.4
1,302,614 + -0.8
1,302,614 + -0.4
1,302,614 + -0.3
1,302,614 + -0.2
1,302,621 + -0.0
1,302,621 + +0.7
1,302,622 - +0.1
1,302,622 - +0.2
1,302,622 - -0.4
1,302,622 - -0.6
1,302,622 - +0.2
1,302,622 - +0.9
1,302,709 + -0.0
1,302,780 + PGA1_c12540 0.20 +0.2
1,302,793 + PGA1_c12540 0.24 -0.4
1,302,801 + PGA1_c12540 0.26 -0.5
1,302,801 + PGA1_c12540 0.26 -0.1
1,302,801 + PGA1_c12540 0.26 -0.2
1,302,801 + PGA1_c12540 0.26 +0.7
1,302,809 - PGA1_c12540 0.28 +0.1
1,302,821 - PGA1_c12540 0.32 +0.1
1,302,832 + PGA1_c12540 0.35 -1.1
1,302,832 + PGA1_c12540 0.35 -0.0
1,302,908 + PGA1_c12540 0.56 +0.7
1,302,966 + PGA1_c12540 0.72 -0.7
1,302,974 - PGA1_c12540 0.74 -1.0
1,303,069 - +0.2
1,303,089 - +0.2
1,303,184 - PGA1_c12550 0.32 -0.4
1,303,193 + PGA1_c12550 0.35 -0.1
1,303,239 + PGA1_c12550 0.51 +1.3
1,303,254 - PGA1_c12550 0.56 +0.4
1,303,343 + PGA1_c12550 0.87 +0.5
1,303,343 + PGA1_c12550 0.87 +0.3
1,303,480 - -0.3
1,303,493 - -0.2
1,303,957 + -0.0
1,304,022 - -0.2
1,304,045 + -1.1
1,304,066 + -0.4
1,304,168 + PGA1_c12570 0.30 -0.6
1,304,234 + PGA1_c12570 0.45 +0.7
1,304,242 - PGA1_c12570 0.46 +0.1
1,304,325 - PGA1_c12570 0.65 -0.1
1,304,335 + PGA1_c12570 0.67 -0.4

Or see this region's nucleotide sequence