Strain Fitness in Marinobacter adhaerens HP15 around HP15_1150

Experiment: m.b. Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1149 and HP15_1150 are separated by 34 nucleotidesHP15_1150 and HP15_1151 are separated by 169 nucleotidesHP15_1151 and HP15_1152 overlap by 23 nucleotides HP15_1149: HP15_1149 - quinone oxidoreductase putative, PIG3, at 1,183,931 to 1,184,923 _1149 HP15_1150: HP15_1150 - oxidoreductase, zinc-binding dehydrogenase family, at 1,184,958 to 1,185,983 _1150 HP15_1151: HP15_1151 - conserved hypothetical protein, at 1,186,153 to 1,186,566 _1151 HP15_1152: HP15_1152 - conserved hypothetical protein, at 1,186,544 to 1,187,128 _1152 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -1 0 1 2at 1184.068 kb on - strand, within HP15_1149at 1184.068 kb on - strand, within HP15_1149at 1184.154 kb on - strand, within HP15_1149at 1184.174 kb on - strand, within HP15_1149at 1184.182 kb on + strand, within HP15_1149at 1184.552 kb on + strand, within HP15_1149at 1184.570 kb on - strand, within HP15_1149at 1184.592 kb on - strand, within HP15_1149at 1184.642 kb on - strand, within HP15_1149at 1184.793 kb on - strand, within HP15_1149at 1184.793 kb on - strand, within HP15_1149at 1184.851 kb on + strandat 1184.922 kb on + strandat 1184.932 kb on + strandat 1184.940 kb on - strandat 1184.940 kb on - strandat 1184.941 kb on + strandat 1185.041 kb on - strandat 1185.425 kb on + strand, within HP15_1150at 1185.493 kb on - strand, within HP15_1150at 1185.499 kb on + strand, within HP15_1150at 1185.501 kb on + strand, within HP15_1150at 1185.579 kb on - strand, within HP15_1150at 1185.614 kb on - strand, within HP15_1150at 1185.670 kb on + strand, within HP15_1150at 1185.691 kb on + strand, within HP15_1150at 1185.724 kb on - strand, within HP15_1150at 1185.749 kb on + strand, within HP15_1150at 1185.842 kb on + strand, within HP15_1150at 1186.038 kb on - strandat 1186.053 kb on + strandat 1186.326 kb on + strand, within HP15_1151at 1186.390 kb on - strand, within HP15_1151at 1186.439 kb on + strand, within HP15_1151at 1186.548 kb on - strandat 1186.746 kb on + strand, within HP15_1152at 1186.747 kb on + strand, within HP15_1152at 1186.747 kb on + strand, within HP15_1152at 1186.755 kb on - strand, within HP15_1152at 1186.756 kb on + strand, within HP15_1152at 1186.857 kb on - strand, within HP15_1152at 1186.911 kb on - strand, within HP15_1152at 1186.970 kb on - strand, within HP15_1152at 1186.983 kb on + strand, within HP15_1152

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml
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1,184,068 - HP15_1149 0.14 -0.6
1,184,068 - HP15_1149 0.14 +0.1
1,184,154 - HP15_1149 0.22 +0.1
1,184,174 - HP15_1149 0.24 -0.3
1,184,182 + HP15_1149 0.25 -0.9
1,184,552 + HP15_1149 0.63 -0.3
1,184,570 - HP15_1149 0.64 -0.0
1,184,592 - HP15_1149 0.67 +0.8
1,184,642 - HP15_1149 0.72 -0.2
1,184,793 - HP15_1149 0.87 +0.1
1,184,793 - HP15_1149 0.87 +1.8
1,184,851 + +0.6
1,184,922 + +0.3
1,184,932 + -0.3
1,184,940 - +1.2
1,184,940 - +0.5
1,184,941 + +0.6
1,185,041 - -0.7
1,185,425 + HP15_1150 0.46 +0.2
1,185,493 - HP15_1150 0.52 +0.3
1,185,499 + HP15_1150 0.53 +0.2
1,185,501 + HP15_1150 0.53 +0.2
1,185,579 - HP15_1150 0.61 +0.9
1,185,614 - HP15_1150 0.64 +0.8
1,185,670 + HP15_1150 0.69 -0.1
1,185,691 + HP15_1150 0.71 +1.1
1,185,724 - HP15_1150 0.75 -0.5
1,185,749 + HP15_1150 0.77 +1.1
1,185,842 + HP15_1150 0.86 +0.0
1,186,038 - -0.5
1,186,053 + -0.5
1,186,326 + HP15_1151 0.42 +0.6
1,186,390 - HP15_1151 0.57 -0.0
1,186,439 + HP15_1151 0.69 +0.3
1,186,548 - +0.3
1,186,746 + HP15_1152 0.35 +0.2
1,186,747 + HP15_1152 0.35 +1.1
1,186,747 + HP15_1152 0.35 -0.2
1,186,755 - HP15_1152 0.36 +0.2
1,186,756 + HP15_1152 0.36 -0.3
1,186,857 - HP15_1152 0.54 +0.5
1,186,911 - HP15_1152 0.63 +0.3
1,186,970 - HP15_1152 0.73 +0.1
1,186,983 + HP15_1152 0.75 +0.0

Or see this region's nucleotide sequence