Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11700 and PGA1_c11710 are separated by 96 nucleotides PGA1_c11710 and PGA1_c11720 are separated by 180 nucleotides
PGA1_c11700: PGA1_c11700 - 5,10-methylenetetrahydrofolate reductase MetF, at 1,211,739 to 1,212,608
_c11700
PGA1_c11710: PGA1_c11710 - transcriptional regulator, LysR family, at 1,212,705 to 1,213,610
_c11710
PGA1_c11720: PGA1_c11720 - inositol-1-monophosphatase SuhB, at 1,213,791 to 1,214,576
_c11720
Position (kb)
1212
1213
1214 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1211.709 kb on - strand at 1211.799 kb on + strand at 1211.804 kb on + strand at 1211.807 kb on - strand at 1211.812 kb on - strand at 1211.812 kb on - strand at 1211.812 kb on - strand at 1211.829 kb on - strand, within PGA1_c11700 at 1211.838 kb on + strand, within PGA1_c11700 at 1211.858 kb on + strand, within PGA1_c11700 at 1211.866 kb on - strand, within PGA1_c11700 at 1211.866 kb on - strand, within PGA1_c11700 at 1211.883 kb on - strand, within PGA1_c11700 at 1211.959 kb on - strand, within PGA1_c11700 at 1211.989 kb on + strand, within PGA1_c11700 at 1212.048 kb on - strand, within PGA1_c11700 at 1212.131 kb on - strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.147 kb on + strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.155 kb on - strand, within PGA1_c11700 at 1212.181 kb on - strand, within PGA1_c11700 at 1212.273 kb on - strand, within PGA1_c11700 at 1212.361 kb on - strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.396 kb on + strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.404 kb on - strand, within PGA1_c11700 at 1212.437 kb on - strand, within PGA1_c11700 at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.525 kb on + strand at 1212.533 kb on - strand at 1212.533 kb on - strand at 1212.602 kb on - strand at 1212.636 kb on - strand at 1212.687 kb on + strand at 1212.782 kb on + strand at 1212.790 kb on - strand at 1212.846 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.932 kb on + strand, within PGA1_c11710 at 1212.940 kb on - strand, within PGA1_c11710 at 1212.940 kb on - strand, within PGA1_c11710 at 1213.043 kb on - strand, within PGA1_c11710 at 1213.050 kb on + strand, within PGA1_c11710 at 1213.068 kb on - strand, within PGA1_c11710 at 1213.097 kb on - strand, within PGA1_c11710 at 1213.118 kb on + strand, within PGA1_c11710 at 1213.204 kb on - strand, within PGA1_c11710 at 1213.273 kb on + strand, within PGA1_c11710 at 1213.281 kb on + strand, within PGA1_c11710 at 1213.281 kb on - strand, within PGA1_c11710 at 1213.346 kb on + strand, within PGA1_c11710 at 1213.354 kb on - strand, within PGA1_c11710 at 1213.433 kb on + strand, within PGA1_c11710 at 1213.438 kb on + strand, within PGA1_c11710 at 1213.479 kb on - strand, within PGA1_c11710 at 1213.497 kb on + strand, within PGA1_c11710 at 1213.497 kb on - strand, within PGA1_c11710 at 1213.497 kb on - strand, within PGA1_c11710 at 1213.510 kb on + strand, within PGA1_c11710 at 1213.573 kb on - strand at 1213.574 kb on + strand at 1213.645 kb on - strand at 1213.645 kb on - strand at 1213.645 kb on - strand at 1213.654 kb on + strand at 1213.654 kb on + strand at 1213.676 kb on + strand at 1213.706 kb on + strand at 1213.709 kb on - strand at 1214.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 1,211,709 - +0.4 1,211,799 + -1.6 1,211,804 + +0.3 1,211,807 - +0.1 1,211,812 - -0.2 1,211,812 - -0.4 1,211,812 - -1.8 1,211,829 - PGA1_c11700 0.10 +0.0 1,211,838 + PGA1_c11700 0.11 +1.3 1,211,858 + PGA1_c11700 0.14 +0.6 1,211,866 - PGA1_c11700 0.15 +0.0 1,211,866 - PGA1_c11700 0.15 +0.3 1,211,883 - PGA1_c11700 0.17 +0.1 1,211,959 - PGA1_c11700 0.25 +0.4 1,211,989 + PGA1_c11700 0.29 -0.1 1,212,048 - PGA1_c11700 0.36 +0.1 1,212,131 - PGA1_c11700 0.45 +0.6 1,212,147 + PGA1_c11700 0.47 -0.2 1,212,147 + PGA1_c11700 0.47 +0.4 1,212,147 + PGA1_c11700 0.47 +0.5 1,212,147 + PGA1_c11700 0.47 +0.1 1,212,155 - PGA1_c11700 0.48 +0.4 1,212,155 - PGA1_c11700 0.48 -0.1 1,212,155 - PGA1_c11700 0.48 -0.0 1,212,181 - PGA1_c11700 0.51 +0.3 1,212,273 - PGA1_c11700 0.61 -0.4 1,212,361 - PGA1_c11700 0.71 +0.2 1,212,396 + PGA1_c11700 0.76 +0.7 1,212,396 + PGA1_c11700 0.76 -0.5 1,212,396 + PGA1_c11700 0.76 -0.4 1,212,396 + PGA1_c11700 0.76 -0.2 1,212,396 + PGA1_c11700 0.76 -1.2 1,212,396 + PGA1_c11700 0.76 +0.9 1,212,404 - PGA1_c11700 0.76 +0.3 1,212,404 - PGA1_c11700 0.76 +0.1 1,212,404 - PGA1_c11700 0.76 -0.8 1,212,404 - PGA1_c11700 0.76 +0.0 1,212,404 - PGA1_c11700 0.76 -0.3 1,212,404 - PGA1_c11700 0.76 -0.2 1,212,404 - PGA1_c11700 0.76 -0.3 1,212,404 - PGA1_c11700 0.76 -0.2 1,212,437 - PGA1_c11700 0.80 +0.5 1,212,525 + +0.3 1,212,525 + -0.5 1,212,525 + -0.0 1,212,525 + +0.8 1,212,533 - -0.9 1,212,533 - -0.1 1,212,602 - +0.1 1,212,636 - +0.8 1,212,687 + +0.9 1,212,782 + +1.4 1,212,790 - +1.5 1,212,846 + PGA1_c11710 0.16 +1.7 1,212,932 + PGA1_c11710 0.25 +0.9 1,212,932 + PGA1_c11710 0.25 +1.8 1,212,932 + PGA1_c11710 0.25 +2.8 1,212,940 - PGA1_c11710 0.26 +1.5 1,212,940 - PGA1_c11710 0.26 +1.5 1,213,043 - PGA1_c11710 0.37 +0.9 1,213,050 + PGA1_c11710 0.38 +1.1 1,213,068 - PGA1_c11710 0.40 +0.8 1,213,097 - PGA1_c11710 0.43 +1.0 1,213,118 + PGA1_c11710 0.46 +0.6 1,213,204 - PGA1_c11710 0.55 -0.2 1,213,273 + PGA1_c11710 0.63 +0.6 1,213,281 + PGA1_c11710 0.64 +1.6 1,213,281 - PGA1_c11710 0.64 +0.7 1,213,346 + PGA1_c11710 0.71 +0.9 1,213,354 - PGA1_c11710 0.72 +1.2 1,213,433 + PGA1_c11710 0.80 +0.6 1,213,438 + PGA1_c11710 0.81 +2.4 1,213,479 - PGA1_c11710 0.85 +1.5 1,213,497 + PGA1_c11710 0.87 +1.4 1,213,497 - PGA1_c11710 0.87 +2.1 1,213,497 - PGA1_c11710 0.87 -0.7 1,213,510 + PGA1_c11710 0.89 +0.6 1,213,573 - +0.7 1,213,574 + -0.4 1,213,645 - -0.7 1,213,645 - -0.4 1,213,645 - +0.6 1,213,654 + -0.2 1,213,654 + +1.0 1,213,676 + -0.2 1,213,706 + +0.0 1,213,709 - -0.6 1,214,578 - -1.0
Or see this region's nucleotide sequence