Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10730

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10720 and PGA1_c10730 are separated by 126 nucleotidesPGA1_c10730 and PGA1_c10740 are separated by 48 nucleotidesPGA1_c10740 and PGA1_c10750 are separated by 108 nucleotides PGA1_c10720: PGA1_c10720 - putative sec-independent protein translocase protein TatC, at 1,108,408 to 1,109,376 _c10720 PGA1_c10730: PGA1_c10730 - ribose-5-phosphate isomerase B, at 1,109,503 to 1,109,958 _c10730 PGA1_c10740: PGA1_c10740 - Predicted ATPase (AAA+ superfamily), at 1,110,007 to 1,110,849 _c10740 PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184 _c10750 Position (kb) 1109 1110Strain fitness (log2 ratio) -1 0 1at 1109.331 kb on - strandat 1109.422 kb on + strandat 1109.463 kb on + strandat 1109.530 kb on + strandat 1109.560 kb on - strand, within PGA1_c10730at 1109.562 kb on + strand, within PGA1_c10730at 1109.570 kb on - strand, within PGA1_c10730at 1109.597 kb on + strand, within PGA1_c10730at 1109.605 kb on - strand, within PGA1_c10730at 1109.921 kb on + strandat 1109.961 kb on + strandat 1109.968 kb on + strandat 1110.014 kb on + strandat 1110.019 kb on + strandat 1110.019 kb on + strandat 1110.026 kb on + strandat 1110.027 kb on - strandat 1110.066 kb on + strandat 1110.125 kb on + strand, within PGA1_c10740at 1110.171 kb on + strand, within PGA1_c10740at 1110.179 kb on - strand, within PGA1_c10740at 1110.190 kb on + strand, within PGA1_c10740at 1110.230 kb on + strand, within PGA1_c10740at 1110.230 kb on + strand, within PGA1_c10740at 1110.411 kb on - strand, within PGA1_c10740at 1110.417 kb on - strand, within PGA1_c10740at 1110.430 kb on + strand, within PGA1_c10740at 1110.433 kb on - strand, within PGA1_c10740at 1110.451 kb on + strand, within PGA1_c10740at 1110.478 kb on + strand, within PGA1_c10740at 1110.504 kb on + strand, within PGA1_c10740at 1110.519 kb on + strand, within PGA1_c10740at 1110.522 kb on - strand, within PGA1_c10740at 1110.586 kb on + strand, within PGA1_c10740at 1110.766 kb on + strandat 1110.812 kb on - strandat 1110.831 kb on - strandat 1110.841 kb on - strandat 1110.885 kb on - strandat 1110.940 kb on + strandat 1110.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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1,109,331 - -0.4
1,109,422 + -0.6
1,109,463 + -0.8
1,109,530 + -0.2
1,109,560 - PGA1_c10730 0.12 +0.5
1,109,562 + PGA1_c10730 0.13 +1.1
1,109,570 - PGA1_c10730 0.15 +0.2
1,109,597 + PGA1_c10730 0.21 +1.1
1,109,605 - PGA1_c10730 0.22 +0.8
1,109,921 + -0.8
1,109,961 + -0.9
1,109,968 + -1.0
1,110,014 + +0.2
1,110,019 + +0.2
1,110,019 + +0.4
1,110,026 + -0.2
1,110,027 - +0.6
1,110,066 + -0.6
1,110,125 + PGA1_c10740 0.14 +0.1
1,110,171 + PGA1_c10740 0.19 -0.0
1,110,179 - PGA1_c10740 0.20 +1.1
1,110,190 + PGA1_c10740 0.22 +1.2
1,110,230 + PGA1_c10740 0.26 -0.1
1,110,230 + PGA1_c10740 0.26 -0.1
1,110,411 - PGA1_c10740 0.48 -0.4
1,110,417 - PGA1_c10740 0.49 -0.0
1,110,430 + PGA1_c10740 0.50 -0.9
1,110,433 - PGA1_c10740 0.51 -0.1
1,110,451 + PGA1_c10740 0.53 +0.1
1,110,478 + PGA1_c10740 0.56 -0.6
1,110,504 + PGA1_c10740 0.59 -0.8
1,110,519 + PGA1_c10740 0.61 -0.1
1,110,522 - PGA1_c10740 0.61 +1.1
1,110,586 + PGA1_c10740 0.69 -0.7
1,110,766 + -0.4
1,110,812 - +0.2
1,110,831 - +0.1
1,110,841 - +0.2
1,110,885 - -0.4
1,110,940 + +0.3
1,110,948 - -0.1

Or see this region's nucleotide sequence