Experiment: m.b. Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1034 and HP15_1035 are separated by 102 nucleotides HP15_1035 and HP15_1036 are separated by 214 nucleotides
HP15_1034: HP15_1034 - Zn-dependent alcohol dehydrogenase, at 1,052,793 to 1,053,851
_1034
HP15_1035: HP15_1035 - phenazine biosynthesis protein, PhzF family, at 1,053,954 to 1,054,757
_1035
HP15_1036: HP15_1036 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,054,972 to 1,056,414
_1036
Position (kb)
1053
1054
1055 Strain fitness (log2 ratio)
-1
0
1 at 1053.177 kb on - strand, within HP15_1034 at 1053.354 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.370 kb on + strand, within HP15_1034 at 1053.448 kb on - strand, within HP15_1034 at 1053.497 kb on - strand, within HP15_1034 at 1053.504 kb on + strand, within HP15_1034 at 1053.531 kb on - strand, within HP15_1034 at 1053.608 kb on + strand, within HP15_1034 at 1053.645 kb on - strand, within HP15_1034 at 1053.803 kb on + strand at 1053.941 kb on + strand at 1054.070 kb on + strand, within HP15_1035 at 1054.204 kb on + strand, within HP15_1035 at 1054.222 kb on - strand, within HP15_1035 at 1054.232 kb on + strand, within HP15_1035 at 1054.255 kb on - strand, within HP15_1035 at 1054.286 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.341 kb on + strand, within HP15_1035 at 1054.349 kb on - strand, within HP15_1035 at 1054.351 kb on + strand, within HP15_1035 at 1054.394 kb on - strand, within HP15_1035 at 1054.502 kb on - strand, within HP15_1035 at 1054.511 kb on - strand, within HP15_1035 at 1054.515 kb on + strand, within HP15_1035 at 1054.546 kb on + strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.564 kb on - strand, within HP15_1035 at 1054.733 kb on - strand at 1054.747 kb on + strand at 1054.761 kb on - strand at 1054.838 kb on - strand at 1054.902 kb on - strand at 1054.919 kb on + strand at 1054.929 kb on + strand at 1055.053 kb on + strand at 1055.162 kb on + strand, within HP15_1036 at 1055.182 kb on - strand, within HP15_1036 at 1055.230 kb on + strand, within HP15_1036 at 1055.265 kb on - strand, within HP15_1036 at 1055.282 kb on + strand, within HP15_1036 at 1055.282 kb on + strand, within HP15_1036 at 1055.290 kb on - strand, within HP15_1036 at 1055.325 kb on + strand, within HP15_1036 at 1055.351 kb on + strand, within HP15_1036 at 1055.376 kb on - strand, within HP15_1036 at 1055.418 kb on - strand, within HP15_1036 at 1055.630 kb on + strand, within HP15_1036 at 1055.676 kb on - strand, within HP15_1036 at 1055.677 kb on - strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.696 kb on + strand, within HP15_1036 at 1055.748 kb on + strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036 at 1055.756 kb on - strand, within HP15_1036
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.008 mg/ml remove 1,053,177 - HP15_1034 0.36 -0.2 1,053,354 + HP15_1034 0.53 -0.0 1,053,370 + HP15_1034 0.54 -1.0 1,053,370 + HP15_1034 0.54 +0.2 1,053,448 - HP15_1034 0.62 -0.8 1,053,497 - HP15_1034 0.66 +1.1 1,053,504 + HP15_1034 0.67 +0.2 1,053,531 - HP15_1034 0.70 +0.3 1,053,608 + HP15_1034 0.77 -0.2 1,053,645 - HP15_1034 0.80 -0.9 1,053,803 + -1.0 1,053,941 + +0.6 1,054,070 + HP15_1035 0.14 +1.4 1,054,204 + HP15_1035 0.31 +1.3 1,054,222 - HP15_1035 0.33 +0.3 1,054,232 + HP15_1035 0.35 -0.2 1,054,255 - HP15_1035 0.37 +0.3 1,054,286 + HP15_1035 0.41 +0.6 1,054,341 + HP15_1035 0.48 +0.1 1,054,341 + HP15_1035 0.48 +0.8 1,054,349 - HP15_1035 0.49 +0.2 1,054,351 + HP15_1035 0.49 +0.5 1,054,394 - HP15_1035 0.55 +0.6 1,054,502 - HP15_1035 0.68 -0.4 1,054,511 - HP15_1035 0.69 +0.3 1,054,515 + HP15_1035 0.70 +0.2 1,054,546 + HP15_1035 0.74 +0.5 1,054,564 - HP15_1035 0.76 +0.3 1,054,564 - HP15_1035 0.76 +0.0 1,054,733 - -0.7 1,054,747 + -0.7 1,054,761 - -0.9 1,054,838 - -0.1 1,054,902 - +0.9 1,054,919 + -0.8 1,054,929 + +0.8 1,055,053 + +0.4 1,055,162 + HP15_1036 0.13 +0.4 1,055,182 - HP15_1036 0.15 -0.3 1,055,230 + HP15_1036 0.18 -0.9 1,055,265 - HP15_1036 0.20 +0.8 1,055,282 + HP15_1036 0.21 -0.4 1,055,282 + HP15_1036 0.21 -1.1 1,055,290 - HP15_1036 0.22 -0.5 1,055,325 + HP15_1036 0.24 +0.7 1,055,351 + HP15_1036 0.26 +0.1 1,055,376 - HP15_1036 0.28 +0.1 1,055,418 - HP15_1036 0.31 -0.5 1,055,630 + HP15_1036 0.46 +1.3 1,055,676 - HP15_1036 0.49 -0.2 1,055,677 - HP15_1036 0.49 -0.6 1,055,696 + HP15_1036 0.50 +0.4 1,055,696 + HP15_1036 0.50 -0.1 1,055,696 + HP15_1036 0.50 -0.1 1,055,748 + HP15_1036 0.54 -0.1 1,055,756 - HP15_1036 0.54 -1.5 1,055,756 - HP15_1036 0.54 +0.1
Or see this region's nucleotide sequence