Experiment: MoLS4 with Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0300 and DVU0301 are separated by 165 nucleotides DVU0301 and DVU0302 are separated by 219 nucleotides DVU0302 and DVU0303 are separated by 347 nucleotides DVU0303 and DVU0304 are separated by 30 nucleotides
DVU0300: DVU0300 - radical SAM domain protein (TIGR), at 347,569 to 348,306
DVU0300
DVU0301: DVU0301 - hypothetical protein (TIGR), at 348,472 to 348,621
DVU0301
DVU0302: DVU0302 - chemotaxis protein CheX, putative (TIGR), at 348,841 to 349,308
DVU0302
DVU0303: DVU0303 - hypothetical protein (TIGR), at 349,656 to 349,973
DVU0303
DVU0304: DVU0304 - hypothetical protein (TIGR), at 350,004 to 350,285
DVU0304
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.440 kb on - strand at 348.575 kb on - strand, within DVU0301 at 348.610 kb on + strand at 348.644 kb on - strand at 348.764 kb on + strand at 348.772 kb on + strand at 348.841 kb on - strand at 348.928 kb on + strand, within DVU0302 at 348.956 kb on + strand, within DVU0302 at 348.965 kb on - strand, within DVU0302 at 348.973 kb on + strand, within DVU0302 at 349.059 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.213 kb on - strand, within DVU0302 at 349.235 kb on - strand, within DVU0302 at 349.247 kb on - strand, within DVU0302 at 349.306 kb on + strand at 349.365 kb on + strand at 349.369 kb on - strand at 349.373 kb on + strand at 349.373 kb on - strand at 349.403 kb on + strand at 349.411 kb on + strand at 349.419 kb on - strand at 349.426 kb on - strand at 349.436 kb on + strand at 349.463 kb on - strand at 349.480 kb on + strand at 349.500 kb on - strand at 349.579 kb on - strand at 349.579 kb on - strand at 349.605 kb on + strand at 349.618 kb on - strand at 349.622 kb on + strand at 349.639 kb on + strand at 349.805 kb on + strand, within DVU0303 at 349.819 kb on - strand, within DVU0303 at 349.829 kb on + strand, within DVU0303 at 349.882 kb on - strand, within DVU0303 at 349.884 kb on - strand, within DVU0303 at 349.927 kb on + strand, within DVU0303 at 349.944 kb on - strand at 349.946 kb on + strand at 350.001 kb on + strand at 350.001 kb on + strand at 350.044 kb on - strand, within DVU0304 at 350.077 kb on + strand, within DVU0304 at 350.079 kb on - strand, within DVU0304 at 350.109 kb on - strand, within DVU0304 at 350.118 kb on + strand, within DVU0304 at 350.187 kb on - strand, within DVU0304 at 350.201 kb on + strand, within DVU0304 at 350.208 kb on + strand, within DVU0304 at 350.215 kb on + strand, within DVU0304 at 350.218 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.223 kb on - strand, within DVU0304 at 350.228 kb on - strand, within DVU0304 at 350.264 kb on - strand at 350.266 kb on + strand at 350.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Urea (N) remove 348,440 - -0.1 348,575 - DVU0301 0.69 +0.1 348,610 + -0.2 348,644 - -0.0 348,764 + -2.6 348,772 + +0.2 348,841 - -1.1 348,928 + DVU0302 0.19 +0.8 348,956 + DVU0302 0.25 +1.9 348,965 - DVU0302 0.26 +0.3 348,973 + DVU0302 0.28 +0.3 349,059 - DVU0302 0.47 +1.7 349,213 - DVU0302 0.79 +0.8 349,213 - DVU0302 0.79 +2.2 349,235 - DVU0302 0.84 +0.5 349,247 - DVU0302 0.87 +0.6 349,306 + +1.9 349,365 + +0.7 349,369 - +0.0 349,373 + +0.7 349,373 - -0.1 349,403 + -1.4 349,411 + +0.7 349,419 - -0.3 349,426 - -0.7 349,436 + -0.0 349,463 - -0.8 349,480 + -0.3 349,500 - -0.1 349,579 - +0.6 349,579 - +0.7 349,605 + -1.2 349,618 - -1.7 349,622 + -0.5 349,639 + -0.7 349,805 + DVU0303 0.47 -0.3 349,819 - DVU0303 0.51 +0.7 349,829 + DVU0303 0.54 -0.1 349,882 - DVU0303 0.71 -0.0 349,884 - DVU0303 0.72 +0.5 349,927 + DVU0303 0.85 -0.6 349,944 - -0.0 349,946 + +0.1 350,001 + +2.7 350,001 + -0.8 350,044 - DVU0304 0.14 -0.6 350,077 + DVU0304 0.26 +0.7 350,079 - DVU0304 0.27 +0.1 350,109 - DVU0304 0.37 +1.4 350,118 + DVU0304 0.40 +0.1 350,187 - DVU0304 0.65 -2.2 350,201 + DVU0304 0.70 -0.0 350,208 + DVU0304 0.72 +0.7 350,215 + DVU0304 0.75 -0.1 350,218 - DVU0304 0.76 +0.1 350,223 - DVU0304 0.78 -2.0 350,223 - DVU0304 0.78 -0.9 350,223 - DVU0304 0.78 -0.2 350,223 - DVU0304 0.78 +0.5 350,223 - DVU0304 0.78 -1.4 350,228 - DVU0304 0.79 +2.0 350,264 - -0.2 350,266 + +0.6 350,276 - -0.9
Or see this region's nucleotide sequence