Experiment: MoLS4 with Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0061 and DVU0062 overlap by 4 nucleotides DVU0062 and DVU0063 are separated by 29 nucleotides DVU0063 and DVU0064 are separated by 88 nucleotides
DVU0061: DVU0061 - multidrug resistance protein, putative (TIGR), at 70,740 to 73,880
DVU0061
DVU0062: DVU0062 - RND efflux system, outer membrane protein, NodT family (TIGR), at 73,877 to 75,391
DVU0062
DVU0063: DVU0063 - transcriptional regulator, MarR family (TIGR), at 75,421 to 75,861
DVU0063
DVU0064: DVU0064 - hypothetical protein (TIGR), at 75,950 to 76,858
DVU0064
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 72.913 kb on - strand, within DVU0061 at 72.935 kb on - strand, within DVU0061 at 72.978 kb on - strand, within DVU0061 at 73.000 kb on + strand, within DVU0061 at 73.100 kb on - strand, within DVU0061 at 73.138 kb on - strand, within DVU0061 at 73.144 kb on + strand, within DVU0061 at 73.154 kb on + strand, within DVU0061 at 73.205 kb on + strand, within DVU0061 at 73.234 kb on + strand, within DVU0061 at 73.242 kb on - strand, within DVU0061 at 73.242 kb on - strand, within DVU0061 at 73.321 kb on + strand, within DVU0061 at 73.356 kb on + strand, within DVU0061 at 73.364 kb on - strand, within DVU0061 at 73.439 kb on - strand, within DVU0061 at 73.457 kb on + strand, within DVU0061 at 73.465 kb on - strand, within DVU0061 at 73.482 kb on - strand, within DVU0061 at 73.522 kb on - strand, within DVU0061 at 73.595 kb on + strand at 73.682 kb on - strand at 73.710 kb on - strand at 73.821 kb on - strand at 73.843 kb on + strand at 73.898 kb on + strand at 73.967 kb on - strand at 73.967 kb on - strand at 74.035 kb on + strand, within DVU0062 at 74.043 kb on - strand, within DVU0062 at 74.051 kb on + strand, within DVU0062 at 74.066 kb on - strand, within DVU0062 at 74.110 kb on - strand, within DVU0062 at 74.179 kb on + strand, within DVU0062 at 74.187 kb on - strand, within DVU0062 at 74.254 kb on + strand, within DVU0062 at 74.267 kb on + strand, within DVU0062 at 74.354 kb on + strand, within DVU0062 at 74.452 kb on - strand, within DVU0062 at 74.486 kb on - strand, within DVU0062 at 74.519 kb on - strand, within DVU0062 at 74.540 kb on + strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.561 kb on - strand, within DVU0062 at 74.747 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.861 kb on - strand, within DVU0062 at 74.866 kb on - strand, within DVU0062 at 74.898 kb on - strand, within DVU0062 at 74.994 kb on + strand, within DVU0062 at 75.365 kb on - strand at 75.365 kb on - strand at 75.385 kb on + strand at 75.544 kb on - strand, within DVU0063 at 75.594 kb on + strand, within DVU0063 at 75.602 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.604 kb on - strand, within DVU0063 at 75.711 kb on + strand, within DVU0063 at 75.811 kb on + strand, within DVU0063 at 75.827 kb on + strand at 75.833 kb on - strand at 75.861 kb on + strand at 75.939 kb on - strand at 75.953 kb on - strand at 76.051 kb on + strand, within DVU0064 at 76.210 kb on + strand, within DVU0064 at 76.269 kb on - strand, within DVU0064 at 76.271 kb on + strand, within DVU0064 at 76.313 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.320 kb on + strand, within DVU0064 at 76.366 kb on + strand, within DVU0064 at 76.381 kb on + strand, within DVU0064 at 76.388 kb on + strand, within DVU0064
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Urea (N) remove 72,913 - DVU0061 0.69 -0.5 72,935 - DVU0061 0.70 +0.4 72,978 - DVU0061 0.71 +0.9 73,000 + DVU0061 0.72 +0.0 73,100 - DVU0061 0.75 +0.7 73,138 - DVU0061 0.76 +0.2 73,144 + DVU0061 0.77 -0.3 73,154 + DVU0061 0.77 -0.8 73,205 + DVU0061 0.78 -0.1 73,234 + DVU0061 0.79 +0.2 73,242 - DVU0061 0.80 -1.6 73,242 - DVU0061 0.80 -0.2 73,321 + DVU0061 0.82 +1.5 73,356 + DVU0061 0.83 -1.2 73,364 - DVU0061 0.84 -0.2 73,439 - DVU0061 0.86 -0.6 73,457 + DVU0061 0.87 +0.1 73,465 - DVU0061 0.87 -1.0 73,482 - DVU0061 0.87 -2.4 73,522 - DVU0061 0.89 -0.8 73,595 + -0.2 73,682 - -2.1 73,710 - -0.0 73,821 - +2.7 73,843 + +1.1 73,898 + -0.9 73,967 - -0.3 73,967 - -0.7 74,035 + DVU0062 0.10 -1.8 74,043 - DVU0062 0.11 +0.1 74,051 + DVU0062 0.11 +1.1 74,066 - DVU0062 0.12 -0.8 74,110 - DVU0062 0.15 -0.1 74,179 + DVU0062 0.20 -0.3 74,187 - DVU0062 0.20 -0.3 74,254 + DVU0062 0.25 -0.2 74,267 + DVU0062 0.26 -0.3 74,354 + DVU0062 0.31 -0.4 74,452 - DVU0062 0.38 -0.3 74,486 - DVU0062 0.40 -0.3 74,519 - DVU0062 0.42 -1.1 74,540 + DVU0062 0.44 -0.7 74,561 - DVU0062 0.45 -0.6 74,561 - DVU0062 0.45 -0.9 74,747 - DVU0062 0.57 -1.1 74,861 - DVU0062 0.65 +3.3 74,861 - DVU0062 0.65 -2.6 74,866 - DVU0062 0.65 +2.1 74,898 - DVU0062 0.67 -0.2 74,994 + DVU0062 0.74 +0.4 75,365 - +0.6 75,365 - +0.7 75,385 + -0.5 75,544 - DVU0063 0.28 -1.8 75,594 + DVU0063 0.39 -1.4 75,602 - DVU0063 0.41 -1.5 75,604 - DVU0063 0.41 -2.2 75,604 - DVU0063 0.41 +1.7 75,711 + DVU0063 0.66 -1.9 75,811 + DVU0063 0.88 -0.6 75,827 + -0.2 75,833 - +0.7 75,861 + +0.7 75,939 - +0.4 75,953 - +0.0 76,051 + DVU0064 0.11 +0.8 76,210 + DVU0064 0.29 +0.4 76,269 - DVU0064 0.35 +0.7 76,271 + DVU0064 0.35 -0.5 76,313 + DVU0064 0.40 -0.1 76,320 + DVU0064 0.41 +1.1 76,320 + DVU0064 0.41 -0.6 76,366 + DVU0064 0.46 -2.6 76,381 + DVU0064 0.47 +0.8 76,388 + DVU0064 0.48 -0.1
Or see this region's nucleotide sequence