Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.860.1 and Xcc-8004.861.1 are separated by 625 nucleotides Xcc-8004.861.1 and Xcc-8004.862.1 are separated by 3 nucleotides Xcc-8004.862.1 and Xcc-8004.863.1 are separated by 104 nucleotides
Xcc-8004.860.1: Xcc-8004.860.1 - Aminopeptidase N, at 809,575 to 811,602
Xcc-8004.860.1
Xcc-8004.861.1: Xcc-8004.861.1 - FIG01211470: hypothetical protein, at 812,228 to 812,947
Xcc-8004.861.1
Xcc-8004.862.1: Xcc-8004.862.1 - Hydrolase, haloacid dehalogenase-like family, at 812,951 to 813,574
Xcc-8004.862.1
Xcc-8004.863.1: Xcc-8004.863.1 - hypothetical protein, at 813,679 to 813,891
Xcc-8004.863.1
Position (kb) 812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 811.384 kb on + strand, within Xcc-8004.860.1 at 811.385 kb on - strand, within Xcc-8004.860.1 at 811.385 kb on - strand, within Xcc-8004.860.1 at 811.456 kb on + strand at 811.456 kb on + strand at 811.457 kb on - strand at 811.528 kb on + strand at 811.529 kb on - strand at 811.624 kb on - strand at 811.673 kb on - strand at 811.673 kb on - strand at 811.683 kb on + strand at 811.735 kb on + strand at 811.735 kb on + strand at 811.981 kb on + strand at 812.105 kb on + strand at 812.105 kb on + strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.106 kb on - strand at 812.234 kb on + strand at 812.234 kb on + strand at 812.235 kb on - strand at 812.235 kb on - strand at 812.364 kb on - strand, within Xcc-8004.861.1 at 812.472 kb on - strand, within Xcc-8004.861.1 at 812.675 kb on + strand, within Xcc-8004.861.1 at 812.675 kb on + strand, within Xcc-8004.861.1 at 812.675 kb on + strand, within Xcc-8004.861.1 at 812.676 kb on - strand, within Xcc-8004.861.1 at 812.676 kb on - strand, within Xcc-8004.861.1 at 812.676 kb on - strand, within Xcc-8004.861.1 at 812.676 kb on - strand, within Xcc-8004.861.1 at 812.676 kb on - strand, within Xcc-8004.861.1 at 812.921 kb on - strand at 812.945 kb on + strand at 812.945 kb on + strand at 812.945 kb on + strand at 813.010 kb on - strand at 813.383 kb on + strand, within Xcc-8004.862.1 at 813.383 kb on + strand, within Xcc-8004.862.1 at 813.384 kb on - strand, within Xcc-8004.862.1 at 813.647 kb on - strand at 813.647 kb on - strand at 813.647 kb on - strand at 813.654 kb on - strand at 813.681 kb on - strand at 813.686 kb on + strand at 813.686 kb on + strand at 813.686 kb on + strand at 813.687 kb on - strand at 813.687 kb on - strand at 813.687 kb on - strand at 813.893 kb on + strand at 813.893 kb on + strand at 813.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 811,384 + Xcc-8004.860.1 0.89 -1.6 811,385 - Xcc-8004.860.1 0.89 -1.5 811,385 - Xcc-8004.860.1 0.89 +3.5 811,456 + -0.0 811,456 + -2.8 811,457 - +1.1 811,528 + -0.6 811,529 - +0.8 811,624 - +0.0 811,673 - +0.5 811,673 - +0.8 811,683 + -1.1 811,735 + -0.4 811,735 + +0.4 811,981 + +0.6 812,105 + -1.2 812,105 + +0.4 812,106 - -0.5 812,106 - +0.0 812,106 - -0.2 812,106 - -1.3 812,106 - +1.0 812,106 - +3.1 812,106 - -1.7 812,234 + -0.1 812,234 + +1.1 812,235 - -0.6 812,235 - -0.8 812,364 - Xcc-8004.861.1 0.19 +0.9 812,472 - Xcc-8004.861.1 0.34 -1.2 812,675 + Xcc-8004.861.1 0.62 -0.8 812,675 + Xcc-8004.861.1 0.62 -1.1 812,675 + Xcc-8004.861.1 0.62 -0.7 812,676 - Xcc-8004.861.1 0.62 -2.6 812,676 - Xcc-8004.861.1 0.62 -0.6 812,676 - Xcc-8004.861.1 0.62 -0.3 812,676 - Xcc-8004.861.1 0.62 -0.3 812,676 - Xcc-8004.861.1 0.62 -1.8 812,921 - +0.8 812,945 + -0.8 812,945 + +0.6 812,945 + -1.4 813,010 - +1.0 813,383 + Xcc-8004.862.1 0.69 -0.3 813,383 + Xcc-8004.862.1 0.69 -0.5 813,384 - Xcc-8004.862.1 0.69 +0.4 813,647 - +1.1 813,647 - +1.4 813,647 - +0.5 813,654 - -1.1 813,681 - +0.0 813,686 + -2.7 813,686 + -0.6 813,686 + -1.8 813,687 - +0.4 813,687 - -0.6 813,687 - -0.2 813,893 + -1.8 813,893 + -0.5 813,893 + -0.3
Or see this region's nucleotide sequence