Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.860.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.859.1 and Xcc-8004.860.1 overlap by 4 nucleotidesXcc-8004.860.1 and Xcc-8004.861.1 are separated by 625 nucleotides Xcc-8004.859.1: Xcc-8004.859.1 - Response regulator, at 808,688 to 809,578 Xcc-8004.859.1 Xcc-8004.860.1: Xcc-8004.860.1 - Aminopeptidase N, at 809,575 to 811,602 Xcc-8004.860.1 Xcc-8004.861.1: Xcc-8004.861.1 - FIG01211470: hypothetical protein, at 812,228 to 812,947 Xcc-8004.861.1 Position (kb) 809 810 811 812Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 808.661 kb on + strandat 808.661 kb on + strandat 808.661 kb on + strandat 808.662 kb on - strandat 808.662 kb on - strandat 808.662 kb on - strandat 808.662 kb on - strandat 808.697 kb on + strandat 808.697 kb on + strandat 808.698 kb on - strandat 808.698 kb on - strandat 808.901 kb on + strand, within Xcc-8004.859.1at 808.902 kb on - strand, within Xcc-8004.859.1at 808.902 kb on - strand, within Xcc-8004.859.1at 808.902 kb on - strand, within Xcc-8004.859.1at 808.949 kb on + strand, within Xcc-8004.859.1at 808.949 kb on + strand, within Xcc-8004.859.1at 808.949 kb on + strand, within Xcc-8004.859.1at 808.949 kb on + strand, within Xcc-8004.859.1at 808.949 kb on + strand, within Xcc-8004.859.1at 808.950 kb on - strand, within Xcc-8004.859.1at 808.950 kb on - strand, within Xcc-8004.859.1at 808.950 kb on - strand, within Xcc-8004.859.1at 808.950 kb on - strand, within Xcc-8004.859.1at 808.950 kb on - strand, within Xcc-8004.859.1at 808.952 kb on + strand, within Xcc-8004.859.1at 808.952 kb on + strand, within Xcc-8004.859.1at 808.952 kb on + strand, within Xcc-8004.859.1at 808.952 kb on + strand, within Xcc-8004.859.1at 808.953 kb on - strand, within Xcc-8004.859.1at 808.953 kb on - strand, within Xcc-8004.859.1at 808.953 kb on - strand, within Xcc-8004.859.1at 809.273 kb on + strand, within Xcc-8004.859.1at 809.273 kb on + strand, within Xcc-8004.859.1at 809.274 kb on - strand, within Xcc-8004.859.1at 809.501 kb on + strandat 809.501 kb on + strandat 809.501 kb on + strandat 809.501 kb on + strandat 809.502 kb on - strandat 809.502 kb on - strandat 809.810 kb on - strand, within Xcc-8004.860.1at 809.899 kb on + strand, within Xcc-8004.860.1at 809.899 kb on + strand, within Xcc-8004.860.1at 809.899 kb on + strand, within Xcc-8004.860.1at 809.899 kb on + strand, within Xcc-8004.860.1at 809.900 kb on - strand, within Xcc-8004.860.1at 809.900 kb on - strand, within Xcc-8004.860.1at 810.097 kb on + strand, within Xcc-8004.860.1at 810.098 kb on - strand, within Xcc-8004.860.1at 810.098 kb on - strand, within Xcc-8004.860.1at 810.247 kb on + strand, within Xcc-8004.860.1at 810.247 kb on + strand, within Xcc-8004.860.1at 810.247 kb on + strand, within Xcc-8004.860.1at 810.247 kb on + strand, within Xcc-8004.860.1at 810.248 kb on - strand, within Xcc-8004.860.1at 810.248 kb on - strand, within Xcc-8004.860.1at 810.249 kb on + strand, within Xcc-8004.860.1at 810.249 kb on + strand, within Xcc-8004.860.1at 810.250 kb on - strand, within Xcc-8004.860.1at 810.250 kb on - strand, within Xcc-8004.860.1at 810.364 kb on + strand, within Xcc-8004.860.1at 810.364 kb on + strand, within Xcc-8004.860.1at 810.365 kb on - strand, within Xcc-8004.860.1at 810.365 kb on - strand, within Xcc-8004.860.1at 810.508 kb on + strand, within Xcc-8004.860.1at 810.663 kb on + strand, within Xcc-8004.860.1at 810.663 kb on + strand, within Xcc-8004.860.1at 810.663 kb on + strand, within Xcc-8004.860.1at 810.663 kb on + strand, within Xcc-8004.860.1at 810.663 kb on + strand, within Xcc-8004.860.1at 810.664 kb on - strand, within Xcc-8004.860.1at 810.733 kb on + strand, within Xcc-8004.860.1at 810.733 kb on + strand, within Xcc-8004.860.1at 810.733 kb on + strand, within Xcc-8004.860.1at 810.733 kb on + strand, within Xcc-8004.860.1at 810.733 kb on + strand, within Xcc-8004.860.1at 810.734 kb on - strand, within Xcc-8004.860.1at 810.734 kb on - strand, within Xcc-8004.860.1at 810.734 kb on - strand, within Xcc-8004.860.1at 810.734 kb on - strand, within Xcc-8004.860.1at 810.764 kb on - strand, within Xcc-8004.860.1at 810.910 kb on + strand, within Xcc-8004.860.1at 810.910 kb on + strand, within Xcc-8004.860.1at 810.911 kb on - strand, within Xcc-8004.860.1at 810.911 kb on - strand, within Xcc-8004.860.1at 811.039 kb on + strand, within Xcc-8004.860.1at 811.039 kb on + strand, within Xcc-8004.860.1at 811.040 kb on - strand, within Xcc-8004.860.1at 811.179 kb on + strand, within Xcc-8004.860.1at 811.180 kb on - strand, within Xcc-8004.860.1at 811.384 kb on + strand, within Xcc-8004.860.1at 811.385 kb on - strand, within Xcc-8004.860.1at 811.385 kb on - strand, within Xcc-8004.860.1at 811.456 kb on + strandat 811.456 kb on + strandat 811.457 kb on - strandat 811.528 kb on + strandat 811.529 kb on - strandat 811.624 kb on - strandat 811.673 kb on - strandat 811.673 kb on - strandat 811.683 kb on + strandat 811.735 kb on + strandat 811.735 kb on + strandat 811.981 kb on + strandat 812.105 kb on + strandat 812.105 kb on + strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.106 kb on - strandat 812.234 kb on + strandat 812.234 kb on + strandat 812.235 kb on - strandat 812.235 kb on - strandat 812.364 kb on - strand, within Xcc-8004.861.1at 812.472 kb on - strand, within Xcc-8004.861.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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808,661 + +0.7
808,661 + +0.6
808,661 + +1.5
808,662 - -0.7
808,662 - -1.4
808,662 - -2.1
808,662 - +0.6
808,697 + +1.2
808,697 + +0.8
808,698 - +0.8
808,698 - +0.6
808,901 + Xcc-8004.859.1 0.24 -1.9
808,902 - Xcc-8004.859.1 0.24 -0.0
808,902 - Xcc-8004.859.1 0.24 +0.0
808,902 - Xcc-8004.859.1 0.24 +1.0
808,949 + Xcc-8004.859.1 0.29 -0.5
808,949 + Xcc-8004.859.1 0.29 +1.1
808,949 + Xcc-8004.859.1 0.29 +0.2
808,949 + Xcc-8004.859.1 0.29 -0.8
808,949 + Xcc-8004.859.1 0.29 +0.5
808,950 - Xcc-8004.859.1 0.29 -0.1
808,950 - Xcc-8004.859.1 0.29 -2.1
808,950 - Xcc-8004.859.1 0.29 -2.0
808,950 - Xcc-8004.859.1 0.29 -0.6
808,950 - Xcc-8004.859.1 0.29 -0.2
808,952 + Xcc-8004.859.1 0.30 +2.3
808,952 + Xcc-8004.859.1 0.30 -2.0
808,952 + Xcc-8004.859.1 0.30 -2.1
808,952 + Xcc-8004.859.1 0.30 -0.8
808,953 - Xcc-8004.859.1 0.30 +0.1
808,953 - Xcc-8004.859.1 0.30 -0.2
808,953 - Xcc-8004.859.1 0.30 +0.3
809,273 + Xcc-8004.859.1 0.66 +0.0
809,273 + Xcc-8004.859.1 0.66 -0.6
809,274 - Xcc-8004.859.1 0.66 -2.3
809,501 + +0.7
809,501 + -0.4
809,501 + +0.0
809,501 + +0.7
809,502 - -0.7
809,502 - +1.5
809,810 - Xcc-8004.860.1 0.12 +0.5
809,899 + Xcc-8004.860.1 0.16 -0.2
809,899 + Xcc-8004.860.1 0.16 +0.2
809,899 + Xcc-8004.860.1 0.16 +0.2
809,899 + Xcc-8004.860.1 0.16 +0.9
809,900 - Xcc-8004.860.1 0.16 -0.7
809,900 - Xcc-8004.860.1 0.16 -0.0
810,097 + Xcc-8004.860.1 0.26 +0.2
810,098 - Xcc-8004.860.1 0.26 -2.2
810,098 - Xcc-8004.860.1 0.26 +0.9
810,247 + Xcc-8004.860.1 0.33 -0.1
810,247 + Xcc-8004.860.1 0.33 -0.8
810,247 + Xcc-8004.860.1 0.33 +1.1
810,247 + Xcc-8004.860.1 0.33 -0.9
810,248 - Xcc-8004.860.1 0.33 +0.5
810,248 - Xcc-8004.860.1 0.33 +0.9
810,249 + Xcc-8004.860.1 0.33 -0.2
810,249 + Xcc-8004.860.1 0.33 +0.9
810,250 - Xcc-8004.860.1 0.33 -2.8
810,250 - Xcc-8004.860.1 0.33 -0.9
810,364 + Xcc-8004.860.1 0.39 -0.3
810,364 + Xcc-8004.860.1 0.39 -0.2
810,365 - Xcc-8004.860.1 0.39 +1.1
810,365 - Xcc-8004.860.1 0.39 -1.1
810,508 + Xcc-8004.860.1 0.46 +0.2
810,663 + Xcc-8004.860.1 0.54 -1.3
810,663 + Xcc-8004.860.1 0.54 -1.6
810,663 + Xcc-8004.860.1 0.54 -0.7
810,663 + Xcc-8004.860.1 0.54 +1.6
810,663 + Xcc-8004.860.1 0.54 +0.8
810,664 - Xcc-8004.860.1 0.54 +0.5
810,733 + Xcc-8004.860.1 0.57 -0.6
810,733 + Xcc-8004.860.1 0.57 +0.2
810,733 + Xcc-8004.860.1 0.57 +1.3
810,733 + Xcc-8004.860.1 0.57 -0.5
810,733 + Xcc-8004.860.1 0.57 +0.3
810,734 - Xcc-8004.860.1 0.57 +0.2
810,734 - Xcc-8004.860.1 0.57 +0.3
810,734 - Xcc-8004.860.1 0.57 +0.6
810,734 - Xcc-8004.860.1 0.57 -0.8
810,764 - Xcc-8004.860.1 0.59 +2.0
810,910 + Xcc-8004.860.1 0.66 -2.0
810,910 + Xcc-8004.860.1 0.66 +2.2
810,911 - Xcc-8004.860.1 0.66 +0.4
810,911 - Xcc-8004.860.1 0.66 -0.2
811,039 + Xcc-8004.860.1 0.72 +0.3
811,039 + Xcc-8004.860.1 0.72 -0.7
811,040 - Xcc-8004.860.1 0.72 -0.1
811,179 + Xcc-8004.860.1 0.79 -0.7
811,180 - Xcc-8004.860.1 0.79 +3.7
811,384 + Xcc-8004.860.1 0.89 -1.6
811,385 - Xcc-8004.860.1 0.89 -1.5
811,385 - Xcc-8004.860.1 0.89 +3.5
811,456 + -0.0
811,456 + -2.8
811,457 - +1.1
811,528 + -0.6
811,529 - +0.8
811,624 - +0.0
811,673 - +0.5
811,673 - +0.8
811,683 + -1.1
811,735 + -0.4
811,735 + +0.4
811,981 + +0.6
812,105 + -1.2
812,105 + +0.4
812,106 - -0.5
812,106 - +0.0
812,106 - -0.2
812,106 - -1.3
812,106 - +1.0
812,106 - +3.1
812,106 - -1.7
812,234 + -0.1
812,234 + +1.1
812,235 - -0.6
812,235 - -0.8
812,364 - Xcc-8004.861.1 0.19 +0.9
812,472 - Xcc-8004.861.1 0.34 -1.2

Or see this region's nucleotide sequence