Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotides Xcc-8004.724.1 and Xcc-8004.726.1 are separated by 563 nucleotides
Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175
Xcc-8004.723.1
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Position (kb) 675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 674.432 kb on + strand, within Xcc-8004.723.1 at 674.634 kb on - strand, within Xcc-8004.723.1 at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.290 kb on - strand at 675.326 kb on - strand at 675.330 kb on + strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.421 kb on + strand, within Xcc-8004.724.1 at 675.422 kb on - strand, within Xcc-8004.724.1 at 675.424 kb on - strand, within Xcc-8004.724.1 at 675.453 kb on + strand, within Xcc-8004.724.1 at 675.454 kb on - strand, within Xcc-8004.724.1 at 675.614 kb on + strand, within Xcc-8004.724.1 at 675.615 kb on - strand, within Xcc-8004.724.1 at 675.875 kb on - strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.146 kb on - strand, within Xcc-8004.724.1 at 676.176 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.601 kb on + strand, within Xcc-8004.724.1 at 676.811 kb on + strand at 676.811 kb on + strand at 676.864 kb on + strand at 676.877 kb on - strand at 676.890 kb on + strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.894 kb on + strand at 676.894 kb on + strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.897 kb on + strand at 676.915 kb on - strand at 677.046 kb on + strand at 677.080 kb on - strand at 677.153 kb on - strand at 677.153 kb on - strand at 677.163 kb on + strand at 677.163 kb on + strand at 677.256 kb on + strand at 677.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 674,432 + Xcc-8004.723.1 0.74 -0.4 674,634 - Xcc-8004.723.1 0.81 +1.5 675,289 + -2.1 675,289 + -0.8 675,289 + -1.9 675,289 + +0.9 675,289 + +0.2 675,290 - -0.4 675,326 - -1.0 675,330 + -0.4 675,396 - -0.7 675,396 - +0.3 675,396 - -2.4 675,421 + Xcc-8004.724.1 0.11 +0.5 675,422 - Xcc-8004.724.1 0.11 -0.2 675,424 - Xcc-8004.724.1 0.11 -2.0 675,453 + Xcc-8004.724.1 0.13 +0.5 675,454 - Xcc-8004.724.1 0.13 -1.2 675,614 + Xcc-8004.724.1 0.23 +0.7 675,615 - Xcc-8004.724.1 0.23 +0.1 675,875 - Xcc-8004.724.1 0.40 -0.1 675,953 + Xcc-8004.724.1 0.45 -3.0 675,953 + Xcc-8004.724.1 0.45 +0.5 676,067 + Xcc-8004.724.1 0.52 +0.1 676,067 + Xcc-8004.724.1 0.52 +1.6 676,068 - Xcc-8004.724.1 0.53 -2.8 676,068 - Xcc-8004.724.1 0.53 -0.7 676,146 - Xcc-8004.724.1 0.58 -0.8 676,176 - Xcc-8004.724.1 0.60 +0.2 676,520 - Xcc-8004.724.1 0.82 +2.1 676,520 - Xcc-8004.724.1 0.82 +0.4 676,601 + Xcc-8004.724.1 0.87 -0.7 676,811 + -0.3 676,811 + -1.6 676,864 + +1.2 676,877 - -1.3 676,890 + +1.0 676,891 - -0.7 676,891 - -0.1 676,891 - +0.1 676,894 + +1.0 676,894 + +0.1 676,895 - +0.4 676,895 - +0.0 676,895 - -0.5 676,897 + -0.7 676,915 - -0.9 677,046 + -0.8 677,080 - +0.1 677,153 - +0.9 677,153 - -0.4 677,163 + +0.1 677,163 + -3.2 677,256 + -0.4 677,328 + +0.6
Or see this region's nucleotide sequence