Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.459.1 and Xcc-8004.460.1 are separated by 148 nucleotides Xcc-8004.460.1 and Xcc-8004.461.1 are separated by 347 nucleotides
Xcc-8004.459.1: Xcc-8004.459.1 - 4-hydroxybenzoate transporter, at 420,413 to 421,723
Xcc-8004.459.1
Xcc-8004.460.1: Xcc-8004.460.1 - HDIG domain protein, at 421,872 to 423,113
Xcc-8004.460.1
Xcc-8004.461.1: Xcc-8004.461.1 - Transcriptional regulator, MarR family, at 423,461 to 424,342
Xcc-8004.461.1
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 421.161 kb on + strand, within Xcc-8004.459.1 at 421.161 kb on + strand, within Xcc-8004.459.1 at 421.161 kb on + strand, within Xcc-8004.459.1 at 421.227 kb on - strand, within Xcc-8004.459.1 at 421.652 kb on + strand at 421.652 kb on + strand at 421.653 kb on - strand at 421.653 kb on - strand at 421.745 kb on - strand at 421.842 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.914 kb on + strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.915 kb on - strand at 421.920 kb on + strand at 421.921 kb on - strand at 422.231 kb on + strand, within Xcc-8004.460.1 at 422.382 kb on + strand, within Xcc-8004.460.1 at 422.383 kb on - strand, within Xcc-8004.460.1 at 422.383 kb on - strand, within Xcc-8004.460.1 at 422.388 kb on + strand, within Xcc-8004.460.1 at 422.388 kb on + strand, within Xcc-8004.460.1 at 422.388 kb on + strand, within Xcc-8004.460.1 at 422.388 kb on + strand, within Xcc-8004.460.1 at 422.389 kb on - strand, within Xcc-8004.460.1 at 422.389 kb on - strand, within Xcc-8004.460.1 at 422.389 kb on - strand, within Xcc-8004.460.1 at 422.389 kb on - strand, within Xcc-8004.460.1 at 422.389 kb on - strand, within Xcc-8004.460.1 at 422.695 kb on + strand, within Xcc-8004.460.1 at 422.695 kb on + strand, within Xcc-8004.460.1 at 422.696 kb on - strand, within Xcc-8004.460.1 at 422.745 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.772 kb on + strand, within Xcc-8004.460.1 at 422.860 kb on + strand, within Xcc-8004.460.1 at 422.861 kb on - strand, within Xcc-8004.460.1 at 422.877 kb on + strand, within Xcc-8004.460.1 at 422.877 kb on + strand, within Xcc-8004.460.1 at 422.965 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 422.976 kb on + strand, within Xcc-8004.460.1 at 423.165 kb on - strand at 423.259 kb on + strand at 423.259 kb on + strand at 423.279 kb on - strand at 423.623 kb on - strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1 at 423.777 kb on + strand, within Xcc-8004.461.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 421,161 + Xcc-8004.459.1 0.57 -0.2 421,161 + Xcc-8004.459.1 0.57 -0.5 421,161 + Xcc-8004.459.1 0.57 +0.3 421,227 - Xcc-8004.459.1 0.62 -1.2 421,652 + -0.5 421,652 + -0.3 421,653 - +0.3 421,653 - +1.5 421,745 - +0.9 421,842 + -2.5 421,914 + -0.6 421,914 + +0.2 421,914 + -1.8 421,914 + +0.8 421,914 + +2.5 421,914 + -0.4 421,914 + -1.6 421,914 + -0.5 421,914 + -0.3 421,914 + -2.6 421,914 + +0.2 421,914 + +0.6 421,914 + -0.2 421,914 + -2.1 421,914 + -0.6 421,915 - -0.4 421,915 - -0.4 421,915 - +2.5 421,915 - -0.8 421,915 - +0.5 421,915 - -1.6 421,915 - -1.4 421,915 - -0.6 421,915 - -0.8 421,915 - +0.7 421,915 - -0.2 421,915 - +0.2 421,915 - -0.2 421,915 - -1.5 421,915 - +0.1 421,915 - +0.2 421,915 - +0.5 421,915 - -0.4 421,920 + -0.2 421,921 - +0.4 422,231 + Xcc-8004.460.1 0.29 +1.2 422,382 + Xcc-8004.460.1 0.41 +0.2 422,383 - Xcc-8004.460.1 0.41 -0.9 422,383 - Xcc-8004.460.1 0.41 -0.5 422,388 + Xcc-8004.460.1 0.42 -1.9 422,388 + Xcc-8004.460.1 0.42 +2.4 422,388 + Xcc-8004.460.1 0.42 -1.4 422,388 + Xcc-8004.460.1 0.42 -1.9 422,389 - Xcc-8004.460.1 0.42 +0.5 422,389 - Xcc-8004.460.1 0.42 +0.7 422,389 - Xcc-8004.460.1 0.42 -2.2 422,389 - Xcc-8004.460.1 0.42 -0.4 422,389 - Xcc-8004.460.1 0.42 -1.2 422,695 + Xcc-8004.460.1 0.66 +0.0 422,695 + Xcc-8004.460.1 0.66 +0.4 422,696 - Xcc-8004.460.1 0.66 -0.0 422,745 + Xcc-8004.460.1 0.70 +0.7 422,772 + Xcc-8004.460.1 0.72 +0.8 422,772 + Xcc-8004.460.1 0.72 +0.8 422,772 + Xcc-8004.460.1 0.72 +0.3 422,860 + Xcc-8004.460.1 0.80 +0.9 422,861 - Xcc-8004.460.1 0.80 +2.6 422,877 + Xcc-8004.460.1 0.81 -0.7 422,877 + Xcc-8004.460.1 0.81 +2.6 422,965 + Xcc-8004.460.1 0.88 -1.1 422,976 + Xcc-8004.460.1 0.89 -1.3 422,976 + Xcc-8004.460.1 0.89 +2.9 422,976 + Xcc-8004.460.1 0.89 -0.9 423,165 - -0.4 423,259 + -0.6 423,259 + +0.0 423,279 - -0.6 423,623 - Xcc-8004.461.1 0.18 -3.0 423,777 + Xcc-8004.461.1 0.36 -1.5 423,777 + Xcc-8004.461.1 0.36 -0.8 423,777 + Xcc-8004.461.1 0.36 -1.7 423,777 + Xcc-8004.461.1 0.36 -0.1
Or see this region's nucleotide sequence