Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4477.1

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4473.1 and Xcc-8004.4477.1 are separated by 29 nucleotidesXcc-8004.4477.1 and Xcc-8004.4478.1 overlap by 1 nucleotidesXcc-8004.4478.1 and Xcc-8004.4480.1 are separated by 134 nucleotides Xcc-8004.4473.1: Xcc-8004.4473.1 - FIG01212400: hypothetical protein, at 4,285,408 to 4,287,495 Xcc-8004.4473.1 Xcc-8004.4477.1: Xcc-8004.4477.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 4,287,525 to 4,288,166 Xcc-8004.4477.1 Xcc-8004.4478.1: Xcc-8004.4478.1 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 4,288,166 to 4,288,894 Xcc-8004.4478.1 Xcc-8004.4480.1: Xcc-8004.4480.1 - Phosphomannomutase (EC 5.4.2.8), at 4,289,029 to 4,290,375 Xcc-8004.4480.1 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4286.648 kb on + strand, within Xcc-8004.4473.1at 4286.649 kb on - strand, within Xcc-8004.4473.1at 4286.736 kb on - strand, within Xcc-8004.4473.1at 4286.736 kb on - strand, within Xcc-8004.4473.1at 4286.773 kb on + strand, within Xcc-8004.4473.1at 4286.774 kb on - strand, within Xcc-8004.4473.1at 4286.783 kb on + strand, within Xcc-8004.4473.1at 4286.784 kb on - strand, within Xcc-8004.4473.1at 4286.784 kb on - strand, within Xcc-8004.4473.1at 4286.784 kb on - strand, within Xcc-8004.4473.1at 4286.874 kb on + strand, within Xcc-8004.4473.1at 4286.883 kb on - strand, within Xcc-8004.4473.1at 4286.883 kb on - strand, within Xcc-8004.4473.1at 4286.951 kb on + strand, within Xcc-8004.4473.1at 4287.007 kb on - strand, within Xcc-8004.4473.1at 4287.112 kb on - strand, within Xcc-8004.4473.1at 4287.152 kb on + strand, within Xcc-8004.4473.1at 4287.152 kb on + strand, within Xcc-8004.4473.1at 4287.152 kb on + strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.153 kb on - strand, within Xcc-8004.4473.1at 4287.199 kb on + strand, within Xcc-8004.4473.1at 4287.200 kb on - strand, within Xcc-8004.4473.1at 4287.204 kb on + strand, within Xcc-8004.4473.1at 4287.205 kb on - strand, within Xcc-8004.4473.1at 4287.205 kb on - strand, within Xcc-8004.4473.1at 4287.240 kb on + strand, within Xcc-8004.4473.1at 4287.240 kb on + strand, within Xcc-8004.4473.1at 4287.241 kb on - strand, within Xcc-8004.4473.1at 4287.287 kb on + strandat 4287.469 kb on + strandat 4287.470 kb on - strandat 4287.519 kb on - strandat 4287.519 kb on - strandat 4287.526 kb on + strandat 4287.526 kb on + strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.527 kb on - strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.540 kb on + strandat 4287.570 kb on + strandat 4287.571 kb on - strandat 4287.571 kb on - strandat 4287.571 kb on - strandat 4287.922 kb on + strand, within Xcc-8004.4477.1at 4287.922 kb on + strand, within Xcc-8004.4477.1at 4287.922 kb on + strand, within Xcc-8004.4477.1at 4288.105 kb on + strandat 4288.105 kb on + strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.106 kb on - strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.167 kb on + strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.168 kb on - strandat 4288.227 kb on - strandat 4288.241 kb on - strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.242 kb on + strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.243 kb on - strand, within Xcc-8004.4478.1at 4288.301 kb on + strand, within Xcc-8004.4478.1at 4288.301 kb on + strand, within Xcc-8004.4478.1at 4288.302 kb on - strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.446 kb on + strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.447 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.516 kb on - strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.605 kb on + strand, within Xcc-8004.4478.1at 4288.606 kb on - strand, within Xcc-8004.4478.1at 4288.606 kb on - strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.638 kb on + strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.639 kb on - strand, within Xcc-8004.4478.1at 4288.932 kb on - strandat 4288.932 kb on - strandat 4288.932 kb on - strandat 4288.932 kb on - strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.053 kb on + strandat 4289.054 kb on - strandat 4289.054 kb on - strandat 4289.054 kb on - strandat 4289.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
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4,286,648 + Xcc-8004.4473.1 0.59 -1.1
4,286,649 - Xcc-8004.4473.1 0.59 +0.1
4,286,736 - Xcc-8004.4473.1 0.64 -0.3
4,286,736 - Xcc-8004.4473.1 0.64 -0.4
4,286,773 + Xcc-8004.4473.1 0.65 -0.4
4,286,774 - Xcc-8004.4473.1 0.65 -0.4
4,286,783 + Xcc-8004.4473.1 0.66 +0.3
4,286,784 - Xcc-8004.4473.1 0.66 -1.6
4,286,784 - Xcc-8004.4473.1 0.66 +1.1
4,286,784 - Xcc-8004.4473.1 0.66 -0.3
4,286,874 + Xcc-8004.4473.1 0.70 +0.5
4,286,883 - Xcc-8004.4473.1 0.71 -0.7
4,286,883 - Xcc-8004.4473.1 0.71 +1.7
4,286,951 + Xcc-8004.4473.1 0.74 -0.8
4,287,007 - Xcc-8004.4473.1 0.77 -0.1
4,287,112 - Xcc-8004.4473.1 0.82 -2.5
4,287,152 + Xcc-8004.4473.1 0.84 +0.0
4,287,152 + Xcc-8004.4473.1 0.84 -0.2
4,287,152 + Xcc-8004.4473.1 0.84 +0.2
4,287,153 - Xcc-8004.4473.1 0.84 +0.8
4,287,153 - Xcc-8004.4473.1 0.84 -0.6
4,287,153 - Xcc-8004.4473.1 0.84 -0.4
4,287,153 - Xcc-8004.4473.1 0.84 +1.5
4,287,153 - Xcc-8004.4473.1 0.84 -1.1
4,287,153 - Xcc-8004.4473.1 0.84 -1.7
4,287,153 - Xcc-8004.4473.1 0.84 -1.3
4,287,153 - Xcc-8004.4473.1 0.84 +0.0
4,287,199 + Xcc-8004.4473.1 0.86 +1.5
4,287,200 - Xcc-8004.4473.1 0.86 -1.7
4,287,204 + Xcc-8004.4473.1 0.86 -0.5
4,287,205 - Xcc-8004.4473.1 0.86 -0.7
4,287,205 - Xcc-8004.4473.1 0.86 +0.7
4,287,240 + Xcc-8004.4473.1 0.88 -1.5
4,287,240 + Xcc-8004.4473.1 0.88 -0.7
4,287,241 - Xcc-8004.4473.1 0.88 -0.5
4,287,287 + -0.3
4,287,469 + +1.6
4,287,470 - -0.3
4,287,519 - -0.1
4,287,519 - -0.9
4,287,526 + -1.2
4,287,526 + +0.4
4,287,527 - -0.6
4,287,527 - -0.1
4,287,527 - -0.8
4,287,527 - -0.5
4,287,527 - -0.7
4,287,540 + +0.2
4,287,540 + -0.4
4,287,540 + -2.7
4,287,540 + -1.2
4,287,570 + -0.5
4,287,571 - -0.1
4,287,571 - +0.1
4,287,571 - -1.2
4,287,922 + Xcc-8004.4477.1 0.62 -0.3
4,287,922 + Xcc-8004.4477.1 0.62 -1.4
4,287,922 + Xcc-8004.4477.1 0.62 +2.1
4,288,105 + -0.5
4,288,105 + +1.5
4,288,106 - -1.9
4,288,106 - -2.8
4,288,106 - -0.9
4,288,106 - -0.5
4,288,106 - +0.4
4,288,167 + +1.0
4,288,167 + -1.7
4,288,167 + +0.4
4,288,167 + -0.2
4,288,167 + -2.6
4,288,167 + -0.3
4,288,167 + -0.5
4,288,167 + -0.0
4,288,167 + -0.7
4,288,167 + -2.1
4,288,168 - -1.9
4,288,168 - -1.3
4,288,168 - +0.8
4,288,168 - +0.0
4,288,168 - -1.1
4,288,168 - -1.2
4,288,168 - -2.5
4,288,168 - -0.4
4,288,168 - -1.9
4,288,168 - -0.8
4,288,168 - +1.3
4,288,168 - -3.0
4,288,227 - -1.3
4,288,241 - Xcc-8004.4478.1 0.10 -1.1
4,288,242 + Xcc-8004.4478.1 0.10 -1.6
4,288,242 + Xcc-8004.4478.1 0.10 -2.1
4,288,242 + Xcc-8004.4478.1 0.10 -1.8
4,288,242 + Xcc-8004.4478.1 0.10 -0.8
4,288,242 + Xcc-8004.4478.1 0.10 -2.3
4,288,242 + Xcc-8004.4478.1 0.10 -0.8
4,288,242 + Xcc-8004.4478.1 0.10 -1.3
4,288,242 + Xcc-8004.4478.1 0.10 -3.6
4,288,242 + Xcc-8004.4478.1 0.10 -1.9
4,288,242 + Xcc-8004.4478.1 0.10 -0.1
4,288,243 - Xcc-8004.4478.1 0.11 -0.3
4,288,243 - Xcc-8004.4478.1 0.11 -1.5
4,288,243 - Xcc-8004.4478.1 0.11 +1.5
4,288,243 - Xcc-8004.4478.1 0.11 +0.2
4,288,243 - Xcc-8004.4478.1 0.11 +0.1
4,288,243 - Xcc-8004.4478.1 0.11 -0.1
4,288,243 - Xcc-8004.4478.1 0.11 -1.3
4,288,243 - Xcc-8004.4478.1 0.11 -2.2
4,288,301 + Xcc-8004.4478.1 0.19 +0.3
4,288,301 + Xcc-8004.4478.1 0.19 -1.0
4,288,302 - Xcc-8004.4478.1 0.19 -2.9
4,288,446 + Xcc-8004.4478.1 0.38 -0.5
4,288,446 + Xcc-8004.4478.1 0.38 -1.6
4,288,446 + Xcc-8004.4478.1 0.38 -2.3
4,288,446 + Xcc-8004.4478.1 0.38 -1.2
4,288,446 + Xcc-8004.4478.1 0.38 -1.0
4,288,446 + Xcc-8004.4478.1 0.38 -0.3
4,288,447 - Xcc-8004.4478.1 0.39 -0.5
4,288,447 - Xcc-8004.4478.1 0.39 -2.5
4,288,447 - Xcc-8004.4478.1 0.39 -2.7
4,288,447 - Xcc-8004.4478.1 0.39 -0.8
4,288,447 - Xcc-8004.4478.1 0.39 -0.4
4,288,447 - Xcc-8004.4478.1 0.39 -0.5
4,288,447 - Xcc-8004.4478.1 0.39 +1.9
4,288,447 - Xcc-8004.4478.1 0.39 -1.3
4,288,516 - Xcc-8004.4478.1 0.48 -1.7
4,288,516 - Xcc-8004.4478.1 0.48 -0.2
4,288,516 - Xcc-8004.4478.1 0.48 +1.1
4,288,605 + Xcc-8004.4478.1 0.60 -0.0
4,288,605 + Xcc-8004.4478.1 0.60 +0.2
4,288,605 + Xcc-8004.4478.1 0.60 -0.9
4,288,606 - Xcc-8004.4478.1 0.60 +0.1
4,288,606 - Xcc-8004.4478.1 0.60 -0.7
4,288,638 + Xcc-8004.4478.1 0.65 -3.1
4,288,638 + Xcc-8004.4478.1 0.65 -3.3
4,288,638 + Xcc-8004.4478.1 0.65 -0.4
4,288,638 + Xcc-8004.4478.1 0.65 -1.2
4,288,638 + Xcc-8004.4478.1 0.65 +0.9
4,288,638 + Xcc-8004.4478.1 0.65 -1.1
4,288,638 + Xcc-8004.4478.1 0.65 -1.0
4,288,638 + Xcc-8004.4478.1 0.65 +0.9
4,288,638 + Xcc-8004.4478.1 0.65 -0.2
4,288,638 + Xcc-8004.4478.1 0.65 -1.1
4,288,638 + Xcc-8004.4478.1 0.65 -1.3
4,288,638 + Xcc-8004.4478.1 0.65 +1.8
4,288,639 - Xcc-8004.4478.1 0.65 -1.9
4,288,639 - Xcc-8004.4478.1 0.65 -3.2
4,288,639 - Xcc-8004.4478.1 0.65 +0.4
4,288,639 - Xcc-8004.4478.1 0.65 -1.3
4,288,639 - Xcc-8004.4478.1 0.65 -1.0
4,288,639 - Xcc-8004.4478.1 0.65 -1.4
4,288,639 - Xcc-8004.4478.1 0.65 -0.7
4,288,639 - Xcc-8004.4478.1 0.65 -1.6
4,288,639 - Xcc-8004.4478.1 0.65 -3.1
4,288,639 - Xcc-8004.4478.1 0.65 -1.5
4,288,932 - +0.5
4,288,932 - +0.7
4,288,932 - +0.8
4,288,932 - -1.7
4,289,053 + -1.4
4,289,053 + -0.5
4,289,053 + +1.4
4,289,053 + +1.5
4,289,053 + -0.6
4,289,054 - +0.2
4,289,054 - -0.5
4,289,054 - +0.9
4,289,058 + -0.4

Or see this region's nucleotide sequence