Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.434.1 and Xcc-8004.438.1 are separated by 392 nucleotides Xcc-8004.438.1 and Xcc-8004.439.1 are separated by 119 nucleotides Xcc-8004.439.1 and Xcc-8004.440.1 are separated by 102 nucleotides
Xcc-8004.434.1: Xcc-8004.434.1 - putative; ORF located using Glimmer/Genemark, at 409,363 to 409,809
Xcc-8004.434.1
Xcc-8004.438.1: Xcc-8004.438.1 - hypothetical protein, at 410,202 to 410,423
Xcc-8004.438.1
Xcc-8004.439.1: Xcc-8004.439.1 - putative; ORF located using Glimmer/Genemark, at 410,543 to 411,376
Xcc-8004.439.1
Xcc-8004.440.1: Xcc-8004.440.1 - hypothetical protein, at 411,479 to 411,655
Xcc-8004.440.1
Position (kb) 410
411
412 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 409.543 kb on - strand, within Xcc-8004.434.1 at 409.599 kb on - strand, within Xcc-8004.434.1 at 409.726 kb on + strand, within Xcc-8004.434.1 at 409.794 kb on + strand at 409.794 kb on + strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.795 kb on - strand at 409.829 kb on - strand at 409.841 kb on - strand at 409.881 kb on - strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.922 kb on + strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 409.923 kb on - strand at 410.073 kb on - strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.093 kb on + strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.094 kb on - strand at 410.179 kb on - strand at 410.179 kb on - strand at 410.190 kb on + strand at 410.191 kb on - strand at 410.196 kb on + strand at 410.196 kb on + strand at 410.196 kb on + strand at 410.197 kb on - strand at 410.197 kb on - strand at 410.197 kb on - strand at 410.238 kb on + strand, within Xcc-8004.438.1 at 410.239 kb on - strand, within Xcc-8004.438.1 at 410.243 kb on + strand, within Xcc-8004.438.1 at 410.243 kb on + strand, within Xcc-8004.438.1 at 410.321 kb on - strand, within Xcc-8004.438.1 at 410.380 kb on + strand, within Xcc-8004.438.1 at 410.381 kb on - strand, within Xcc-8004.438.1 at 410.426 kb on + strand at 410.427 kb on - strand at 410.431 kb on - strand at 410.450 kb on + strand at 410.450 kb on + strand at 410.450 kb on + strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.451 kb on - strand at 410.494 kb on + strand at 410.495 kb on - strand at 410.495 kb on - strand at 410.495 kb on - strand at 410.569 kb on - strand at 410.663 kb on - strand, within Xcc-8004.439.1 at 410.693 kb on + strand, within Xcc-8004.439.1 at 410.716 kb on + strand, within Xcc-8004.439.1 at 410.733 kb on + strand, within Xcc-8004.439.1 at 410.734 kb on - strand, within Xcc-8004.439.1 at 410.734 kb on - strand, within Xcc-8004.439.1 at 410.813 kb on + strand, within Xcc-8004.439.1 at 410.882 kb on + strand, within Xcc-8004.439.1 at 410.882 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.937 kb on + strand, within Xcc-8004.439.1 at 410.946 kb on + strand, within Xcc-8004.439.1 at 410.994 kb on + strand, within Xcc-8004.439.1 at 410.995 kb on - strand, within Xcc-8004.439.1 at 411.106 kb on - strand, within Xcc-8004.439.1 at 411.146 kb on + strand, within Xcc-8004.439.1 at 411.146 kb on + strand, within Xcc-8004.439.1 at 411.147 kb on - strand, within Xcc-8004.439.1 at 411.148 kb on + strand, within Xcc-8004.439.1 at 411.149 kb on - strand, within Xcc-8004.439.1 at 411.167 kb on - strand, within Xcc-8004.439.1 at 411.167 kb on - strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.277 kb on + strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.278 kb on - strand, within Xcc-8004.439.1 at 411.355 kb on - strand at 411.452 kb on + strand at 411.812 kb on + strand at 411.812 kb on + strand at 411.813 kb on - strand at 411.813 kb on - strand at 411.839 kb on + strand at 411.840 kb on - strand at 411.890 kb on - strand at 411.890 kb on - strand at 411.890 kb on - strand at 411.902 kb on + strand at 411.902 kb on + strand at 411.917 kb on - strand at 411.917 kb on - strand at 411.943 kb on - strand at 411.986 kb on + strand at 411.987 kb on - strand at 411.987 kb on - strand at 411.987 kb on - strand at 412.092 kb on - strand at 412.103 kb on - strand at 412.115 kb on + strand at 412.116 kb on - strand at 412.116 kb on - strand at 412.116 kb on - strand at 412.265 kb on + strand at 412.265 kb on + strand at 412.266 kb on - strand at 412.266 kb on - strand at 412.266 kb on - strand at 412.308 kb on - strand at 412.351 kb on + strand at 412.351 kb on + strand at 412.351 kb on + strand at 412.351 kb on + strand at 412.351 kb on + strand at 412.352 kb on - strand at 412.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 409,543 - Xcc-8004.434.1 0.40 +0.9 409,599 - Xcc-8004.434.1 0.53 -1.0 409,726 + Xcc-8004.434.1 0.81 -0.2 409,794 + +0.9 409,794 + -0.1 409,795 - +1.5 409,795 - +0.0 409,795 - -3.3 409,829 - +0.4 409,841 - -1.2 409,881 - -0.8 409,922 + +0.4 409,922 + +0.3 409,922 + +0.3 409,922 + +0.0 409,922 + -1.1 409,923 - -1.2 409,923 - +2.1 409,923 - +0.7 409,923 - -0.5 409,923 - +0.9 409,923 - -1.4 409,923 - -1.2 409,923 - +1.1 409,923 - +1.3 409,923 - -0.4 410,073 - -0.1 410,093 + +1.0 410,093 + -3.1 410,093 + +0.1 410,093 + -1.3 410,094 - +0.5 410,094 - -0.6 410,094 - -0.3 410,094 - +0.7 410,094 - -0.6 410,094 - +0.4 410,179 - +0.2 410,179 - -1.8 410,190 + -1.5 410,191 - -0.4 410,196 + +1.5 410,196 + -0.4 410,196 + +0.1 410,197 - -1.7 410,197 - +2.0 410,197 - +0.2 410,238 + Xcc-8004.438.1 0.16 +1.4 410,239 - Xcc-8004.438.1 0.17 -0.6 410,243 + Xcc-8004.438.1 0.18 -0.7 410,243 + Xcc-8004.438.1 0.18 -0.1 410,321 - Xcc-8004.438.1 0.54 -1.7 410,380 + Xcc-8004.438.1 0.80 -2.5 410,381 - Xcc-8004.438.1 0.81 -0.9 410,426 + -1.1 410,427 - -1.8 410,431 - -1.5 410,450 + -0.5 410,450 + -1.8 410,450 + -1.1 410,451 - +1.1 410,451 - +0.1 410,451 - +0.7 410,451 - +0.9 410,451 - +1.3 410,451 - +0.4 410,494 + -0.9 410,495 - -2.8 410,495 - +0.7 410,495 - +1.7 410,569 - -0.1 410,663 - Xcc-8004.439.1 0.14 -1.0 410,693 + Xcc-8004.439.1 0.18 +2.9 410,716 + Xcc-8004.439.1 0.21 -0.1 410,733 + Xcc-8004.439.1 0.23 -1.6 410,734 - Xcc-8004.439.1 0.23 -0.2 410,734 - Xcc-8004.439.1 0.23 +1.8 410,813 + Xcc-8004.439.1 0.32 -2.9 410,882 + Xcc-8004.439.1 0.41 +0.2 410,882 + Xcc-8004.439.1 0.41 -1.5 410,937 + Xcc-8004.439.1 0.47 -1.3 410,937 + Xcc-8004.439.1 0.47 -0.6 410,937 + Xcc-8004.439.1 0.47 +0.1 410,946 + Xcc-8004.439.1 0.48 +0.0 410,994 + Xcc-8004.439.1 0.54 -1.6 410,995 - Xcc-8004.439.1 0.54 -0.7 411,106 - Xcc-8004.439.1 0.68 -1.5 411,146 + Xcc-8004.439.1 0.72 -0.8 411,146 + Xcc-8004.439.1 0.72 +2.5 411,147 - Xcc-8004.439.1 0.72 -1.1 411,148 + Xcc-8004.439.1 0.73 -0.8 411,149 - Xcc-8004.439.1 0.73 +0.5 411,167 - Xcc-8004.439.1 0.75 +0.1 411,167 - Xcc-8004.439.1 0.75 +0.3 411,277 + Xcc-8004.439.1 0.88 -0.4 411,277 + Xcc-8004.439.1 0.88 -1.4 411,277 + Xcc-8004.439.1 0.88 -1.1 411,278 - Xcc-8004.439.1 0.88 -0.1 411,278 - Xcc-8004.439.1 0.88 -0.4 411,278 - Xcc-8004.439.1 0.88 -2.7 411,355 - +0.3 411,452 + -0.1 411,812 + -0.5 411,812 + -0.1 411,813 - -2.4 411,813 - -2.3 411,839 + -1.3 411,840 - +1.4 411,890 - -0.3 411,890 - +0.7 411,890 - -1.1 411,902 + +1.1 411,902 + -1.3 411,917 - +3.0 411,917 - -0.4 411,943 - -2.1 411,986 + +0.3 411,987 - -0.2 411,987 - -0.1 411,987 - -0.1 412,092 - -0.0 412,103 - +1.4 412,115 + -0.9 412,116 - +0.1 412,116 - +1.3 412,116 - +0.4 412,265 + +0.0 412,265 + +1.0 412,266 - -2.4 412,266 - -0.4 412,266 - -1.1 412,308 - -1.1 412,351 + +0.2 412,351 + +0.8 412,351 + +1.1 412,351 + +0.2 412,351 + +0.6 412,352 - +0.5 412,358 + -0.6
Or see this region's nucleotide sequence