Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4286.1 and Xcc-8004.4287.1 are separated by 99 nucleotides Xcc-8004.4287.1 and Xcc-8004.4288.1 overlap by 149 nucleotides Xcc-8004.4288.1 and Xcc-8004.4289.1 overlap by 4 nucleotides
Xcc-8004.4286.1: Xcc-8004.4286.1 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,101,115 to 4,101,828
Xcc-8004.4286.1
Xcc-8004.4287.1: Xcc-8004.4287.1 - Arylesterase precursor (EC 3.1.1.2), at 4,101,928 to 4,102,581
Xcc-8004.4287.1
Xcc-8004.4288.1: Xcc-8004.4288.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,102,433 to 4,103,308
Xcc-8004.4288.1
Xcc-8004.4289.1: Xcc-8004.4289.1 - ABC transporter, permease protein, putative, at 4,103,305 to 4,105,788
Xcc-8004.4289.1
Position (kb) 4102
4103
4104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4101.509 kb on + strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.510 kb on - strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.671 kb on + strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.672 kb on - strand, within Xcc-8004.4286.1 at 4101.719 kb on + strand, within Xcc-8004.4286.1 at 4101.719 kb on + strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.720 kb on - strand, within Xcc-8004.4286.1 at 4101.771 kb on + strand at 4101.772 kb on - strand at 4102.076 kb on + strand, within Xcc-8004.4287.1 at 4102.076 kb on + strand, within Xcc-8004.4287.1 at 4102.077 kb on - strand, within Xcc-8004.4287.1 at 4102.077 kb on - strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.097 kb on + strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.098 kb on - strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.133 kb on + strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.134 kb on - strand, within Xcc-8004.4287.1 at 4102.559 kb on + strand at 4102.560 kb on - strand at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.729 kb on + strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4102.730 kb on - strand, within Xcc-8004.4288.1 at 4103.033 kb on + strand, within Xcc-8004.4288.1 at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.251 kb on + strand at 4103.252 kb on - strand at 4103.252 kb on - strand at 4103.252 kb on - strand at 4103.255 kb on + strand at 4103.255 kb on + strand at 4103.255 kb on + strand at 4103.255 kb on + strand at 4103.256 kb on - strand at 4103.256 kb on - strand at 4103.256 kb on - strand at 4103.722 kb on + strand, within Xcc-8004.4289.1 at 4103.722 kb on + strand, within Xcc-8004.4289.1 at 4103.723 kb on - strand, within Xcc-8004.4289.1 at 4103.723 kb on - strand, within Xcc-8004.4289.1 at 4103.723 kb on - strand, within Xcc-8004.4289.1 at 4103.723 kb on - strand, within Xcc-8004.4289.1 at 4103.884 kb on - strand, within Xcc-8004.4289.1 at 4103.926 kb on + strand, within Xcc-8004.4289.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant remove 4,101,509 + Xcc-8004.4286.1 0.55 -0.1 4,101,510 - Xcc-8004.4286.1 0.55 +3.2 4,101,510 - Xcc-8004.4286.1 0.55 +1.5 4,101,510 - Xcc-8004.4286.1 0.55 +0.6 4,101,510 - Xcc-8004.4286.1 0.55 +1.9 4,101,510 - Xcc-8004.4286.1 0.55 +1.5 4,101,671 + Xcc-8004.4286.1 0.78 +2.0 4,101,671 + Xcc-8004.4286.1 0.78 +1.4 4,101,671 + Xcc-8004.4286.1 0.78 -0.3 4,101,671 + Xcc-8004.4286.1 0.78 -2.5 4,101,671 + Xcc-8004.4286.1 0.78 +1.8 4,101,671 + Xcc-8004.4286.1 0.78 +1.2 4,101,671 + Xcc-8004.4286.1 0.78 +2.6 4,101,671 + Xcc-8004.4286.1 0.78 -1.0 4,101,671 + Xcc-8004.4286.1 0.78 +2.5 4,101,671 + Xcc-8004.4286.1 0.78 +1.9 4,101,671 + Xcc-8004.4286.1 0.78 -1.3 4,101,671 + Xcc-8004.4286.1 0.78 +3.0 4,101,672 - Xcc-8004.4286.1 0.78 -0.5 4,101,672 - Xcc-8004.4286.1 0.78 +2.0 4,101,672 - Xcc-8004.4286.1 0.78 +0.8 4,101,672 - Xcc-8004.4286.1 0.78 +1.4 4,101,672 - Xcc-8004.4286.1 0.78 -0.8 4,101,719 + Xcc-8004.4286.1 0.85 -1.1 4,101,719 + Xcc-8004.4286.1 0.85 -1.1 4,101,720 - Xcc-8004.4286.1 0.85 +1.2 4,101,720 - Xcc-8004.4286.1 0.85 +0.5 4,101,720 - Xcc-8004.4286.1 0.85 +0.9 4,101,720 - Xcc-8004.4286.1 0.85 +2.5 4,101,771 + -0.7 4,101,772 - -1.4 4,102,076 + Xcc-8004.4287.1 0.23 -2.1 4,102,076 + Xcc-8004.4287.1 0.23 -0.2 4,102,077 - Xcc-8004.4287.1 0.23 +1.3 4,102,077 - Xcc-8004.4287.1 0.23 -0.8 4,102,097 + Xcc-8004.4287.1 0.26 +1.2 4,102,097 + Xcc-8004.4287.1 0.26 +0.1 4,102,097 + Xcc-8004.4287.1 0.26 -0.1 4,102,097 + Xcc-8004.4287.1 0.26 +0.7 4,102,097 + Xcc-8004.4287.1 0.26 -1.0 4,102,097 + Xcc-8004.4287.1 0.26 +0.9 4,102,097 + Xcc-8004.4287.1 0.26 +5.1 4,102,098 - Xcc-8004.4287.1 0.26 -0.5 4,102,098 - Xcc-8004.4287.1 0.26 -1.5 4,102,098 - Xcc-8004.4287.1 0.26 -0.8 4,102,098 - Xcc-8004.4287.1 0.26 +0.2 4,102,098 - Xcc-8004.4287.1 0.26 +0.1 4,102,098 - Xcc-8004.4287.1 0.26 +0.7 4,102,098 - Xcc-8004.4287.1 0.26 -2.6 4,102,098 - Xcc-8004.4287.1 0.26 -0.3 4,102,098 - Xcc-8004.4287.1 0.26 -1.1 4,102,098 - Xcc-8004.4287.1 0.26 -0.3 4,102,133 + Xcc-8004.4287.1 0.31 +0.5 4,102,133 + Xcc-8004.4287.1 0.31 +0.5 4,102,133 + Xcc-8004.4287.1 0.31 +0.1 4,102,133 + Xcc-8004.4287.1 0.31 -0.1 4,102,134 - Xcc-8004.4287.1 0.31 -0.2 4,102,134 - Xcc-8004.4287.1 0.31 +0.2 4,102,134 - Xcc-8004.4287.1 0.31 +0.1 4,102,134 - Xcc-8004.4287.1 0.31 -1.3 4,102,134 - Xcc-8004.4287.1 0.31 -1.2 4,102,134 - Xcc-8004.4287.1 0.31 -2.6 4,102,559 + -0.5 4,102,560 - +0.2 4,102,729 + Xcc-8004.4288.1 0.34 +0.0 4,102,729 + Xcc-8004.4288.1 0.34 -0.6 4,102,729 + Xcc-8004.4288.1 0.34 -0.5 4,102,729 + Xcc-8004.4288.1 0.34 -1.7 4,102,730 - Xcc-8004.4288.1 0.34 -2.6 4,102,730 - Xcc-8004.4288.1 0.34 +0.8 4,102,730 - Xcc-8004.4288.1 0.34 -2.3 4,102,730 - Xcc-8004.4288.1 0.34 -0.6 4,103,033 + Xcc-8004.4288.1 0.68 -1.9 4,103,251 + +0.2 4,103,251 + -0.8 4,103,251 + +1.0 4,103,251 + +0.7 4,103,251 + -0.5 4,103,251 + +0.0 4,103,251 + -0.7 4,103,251 + -0.3 4,103,252 - +1.3 4,103,252 - -3.4 4,103,252 - +0.9 4,103,255 + +0.3 4,103,255 + -2.1 4,103,255 + -0.8 4,103,255 + +0.1 4,103,256 - +1.3 4,103,256 - -0.4 4,103,256 - -1.4 4,103,722 + Xcc-8004.4289.1 0.17 -0.1 4,103,722 + Xcc-8004.4289.1 0.17 -0.3 4,103,723 - Xcc-8004.4289.1 0.17 -1.0 4,103,723 - Xcc-8004.4289.1 0.17 +0.0 4,103,723 - Xcc-8004.4289.1 0.17 +1.1 4,103,723 - Xcc-8004.4289.1 0.17 -0.2 4,103,884 - Xcc-8004.4289.1 0.23 -0.0 4,103,926 + Xcc-8004.4289.1 0.25 +0.1
Or see this region's nucleotide sequence